Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2943 ATGAATTCTCCGTCCGCACAGTTTGTTTCCTCGAGAAGGATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGCTTCAAAAGTAACGGCAATTTAAGCGCATCCATTCCCTTAATTGATGAGGCGGACTTGAAGTTTGATAGTAGTCAGTCAGAGGATGCTTCTCATGGTATGCTAGGAACATCTAACAAGTATGAGCAAGAAGCTAATAGACCTATTGATAAGATACAAAGGCGTCTTGCACAAAATCGAGAAGCTGCTCGTAAGAGCCGTCTGCGAAAAAAGGCTTATGTGCAGCAGTTAGAATCGAGTCGTTTGAAGTTAGTGCAGTTGGAGCAAGAGCTCGAACGTGTTAGACAGCAGGGAATGTATATGGGTGGTGGGTTGGATTCTAATAATATGTGTTTTGCTGGACCTGTGAATCCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGACAAATCTCGGAAATGAGAAATGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATGCTGGTTGATGGTATGATGAACCACTATGCTGAAATCTATCGAATGAAATCTGCGGCTGCAAAAACAGATGTTTTTTATGTGATGTCCGGCATGTGGAAAACAACGGCTGAAAGATTTTTCTTGTGGATCGGTGGATTTCGTCCTTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCGTTGACAGAGCAACAACGATTGGATATCGATAACCTTGGACAATCGTGTCAACAAGCAGAAGATGCCCTTTCACAAGGCATGGAGAAACTGCGGCAAACACTCGCTGATAGCGTAGCAGCTGGACAATTCATTGAAGGAACTTATATTCCACAGATGGCTACCGCAATGGAGAAGTTAGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGACCATCTTCGGCAGGAAACCTTGCAGCAAATGTCGCGAACACTTACAATCCGTCAGTCAGCTCGATGTTTGCTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGAGAACCTGCTTAG 1092 0.4432 MNSPSAQFVSSRRMSVYDPIHQINMWGEGFKSNGNLSASIPLIDEADLKFDSSQSEDASHGMLGTSNKYEQEANRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMGGGLDSNNMCFAGPVNPGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRMLVDGMMNHYAEIYRMKSAAAKTDVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIEGTYIPQMATAMEKLEALVSFVNQADHLRQETLQQMSRTLTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2943 363 MobiDBLite consensus disorder prediction 53 77 - -
Mtr3g2943 363 CDD bZIP_HBP1b-like 79 131 - -
Mtr3g2943 363 ProSiteProfiles DOG1 domain profile. 148 358 IPR025422 GO:0006351|GO:0043565
Mtr3g2943 363 Gene3D - 78 128 - -
Mtr3g2943 363 MobiDBLite consensus disorder prediction 55 71 - -
Mtr3g2943 363 Coils Coil 98 125 - -
Mtr3g2943 363 PANTHER TRANSCRIPTION FACTOR TGA1 1 362 - -
Mtr3g2943 363 Coils Coil 159 179 - -
Mtr3g2943 363 PANTHER TRANSCRIPTION FACTOR TGA9 1 362 - -
Mtr3g2943 363 SMART brlzneu 75 135 IPR004827 GO:0003700|GO:0006355
Mtr3g2943 363 Pfam bZIP transcription factor 79 117 IPR004827 GO:0003700|GO:0006355
Mtr3g2943 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 77 121 IPR004827 GO:0003700|GO:0006355
Mtr3g2943 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 82 97 IPR004827 GO:0003700|GO:0006355
Mtr3g2943 363 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Mtr3g2943 363 SUPERFAMILY Leucine zipper domain 79 119 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2943 Mtr-Chr3 43306544 43310090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2943 1 363 Calmodulin-binding Proteins AT5G65210 67.935 0.0 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr3g2943 DOG1 8.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2943 3 43306544 43310090 Mtr3g2943 3 43306544 43310090 ECH
Mtr8g3179 8 42339077 42343004 Mtr3g2943 3 43306544 43310090 ECH
Mtr8g3179 8 42339077 42343004 Mtr3g2943 3 43306544 43310090 PCT