Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2942 ATGGCCGATCACTCAGAATCAGACACCTCTCCTCTCGTCCCACCTCTTCCTCCCGTCGATCCTTCCTCGATCGACCTCGAAGCCGGTCCTTCCGAACAAATTCAGTGCCGGATTTGTCTCGAAACTGATGGTAGGGATTTCATAGCTCCTTGCAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTCAAGGAAGGATTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATTTTGTCTATTTTTCTGGCTGTCCAGCTTATTATTACCTCACTGGCATATTTGGTTTATCTGATAGATGGTTACCAGCAAAATTGGCTTCGTATTCTCTGGGGTTTTGATAGTGCACTGAGCTTCTATTATATATGCGGAGCCCTATTATTTTTTGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGCGCTGACTGTCATTTGCCAGGCACTCTTTGTTTGTGGACTGATTGCACTGCATGTTTTGAGGGCTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTACTATTCATAATGGCTTTGATTGTTCTGGGACTTTTTACAGTAATTGGGATATTTTACAGTGTATTGGTGGCAACTATGGTGGGTCAACGGATATGGCAACGTCACTATCACATACTTGCTAAAAGGATGTTAACAAAGGAGTATGTTGTTGAAGATGTTGACGGAGAGATGACAGGGTCTGATTGGTCTCCCCCAGCCCTCCCAACTGAGCATGTTCAACAATTGAAAACATTGGGCCTCTTATGA 978 0.4427 MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLIITSLAYLVYLIDGYQQNWLRILWGFDSALSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCLWTDCTACFEGCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSDWSPPALPTEHVQQLKTLGLL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2942 325 ProSiteProfiles Zinc finger RING-CH-type profile. 28 90 IPR011016 GO:0008270
Mtr3g2942 325 PANTHER BNAA04G12620D PROTEIN 7 325 - -
Mtr3g2942 325 SMART ringv_2 35 84 IPR011016 GO:0008270
Mtr3g2942 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 98 IPR013083 -
Mtr3g2942 325 SUPERFAMILY RING/U-box 31 88 - -
Mtr3g2942 325 CDD RING_CH-C4HC3_MARCH 36 84 - -
Mtr3g2942 325 Pfam RING-variant domain 36 83 IPR011016 GO:0008270
Mtr3g2942 325 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 7 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2942 Mtr-Chr3 43293372 43298797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2942 1 325 C3H Transcription Factor Family AT2G22120 85.890 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2942 - - gmx:100791777 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2942 3 43293372 43298797 Mtr3g2942 3 43293372 43298797 ECH