Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2941 ATGACAGTTGATATCTCCAACGTCTTCCAAAAACTTTGCAACAAAATTGCAATCTTACTAATATTCGTGTTAGTAGAACTTATCATCTTCATTTGGAAACTAACATCAGATACACAATCAATCACAACTCGCCAATACATAAAATTCATCGAAGAAAAGAACCCTACTATTCGTTACAACAAAAAGTTGAATTCACACGGGGATTGTAGCGTGTGCTTATCAGAATTCGAAGAAGGAGAGAAGGTTCGGAGGTTGAAATGCAAACACACATTTCATAAGGATTGTTTGGATAAATGGTTGCAAGATTATTTTGCTACATGTCCACTTTGTAGGGAACAAGTTTTACCAGATAATGTTGTGTTAAAACATCGTCAGCAACGAAATCAACAGAGTAATATTGAGGGGAATGATGAAAATCTTCCCTATGTGTTGTTCTTGTTACGTGGTGGTAATAACAGTCACTTGCGTAGATAG 474 0.3586 MTVDISNVFQKLCNKIAILLIFVLVELIIFIWKLTSDTQSITTRQYIKFIEEKNPTIRYNKKLNSHGDCSVCLSEFEEGEKVRRLKCKHTFHKDCLDKWLQDYFATCPLCREQVLPDNVVLKHRQQRNQQSNIEGNDENLPYVLFLLRGGNNSHLRR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2941 157 SUPERFAMILY RING/U-box 49 117 - -
Mtr3g2941 157 SMART ring_2 69 110 IPR001841 -
Mtr3g2941 157 PANTHER - 2 152 - -
Mtr3g2941 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 116 IPR013083 -
Mtr3g2941 157 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Mtr3g2941 157 CDD RING-H2_PA-TM-RING 68 111 - -
Mtr3g2941 157 Pfam Ring finger domain 68 111 IPR001841 -
Mtr3g2941 157 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2941 Mtr-Chr3 43288547 43289350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2941 67 126 C3H Transcription Factor Family AT1G15100 50.000 7.34e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2941 K16282 - gmx:102668078 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2941 3 43288547 43289350 Mtr3g2941 3 43288547 43289350 ECH
Mtr8g3175 8 42309551 42311768 Mtr3g2941 3 43288547 43289350 PCT