Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2936 ATGGCGACCGCACTGACTTGGAGATTTGCTTCCAACAATGGCACCACCCTTGCTGCTAATGATTTGGAAAGAAATGGTGATGGCAAGGCTCAAGATTCTGAGGCTCCAACTCCCCATTCTGTTCTGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGCATGGAGGATACAGATGGGACATTAGCAAGTATTGCTCAATGCATTGAGCAGCTGCGTCACAACTCGTCTTCTATGCAAGAGAAAGCGCATTCCTTGAAGCAATTATTGGAGCTTATTGATACGCGTGAAAATGCTTTCAGTGCAGTTGGATCTCATTCTCAGGCAGTTCCGGTGCTTGTTTCCCTTCTCCGATCAGGGTCGTTAAGTGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAACGAGTTAAGGGTGAAAGTCTTGCTTGGAGGATGCATTCCTCCTTTGCTCGGTCTACTGAAGTCCAGTTCAGAAGAAGGTCAAGTAGCTGCTGCAAAGACCATTTTTGCTGTTTCTCAAGGTGATGCCAAAGATCACGTTGGATCAAAAATCTTTTCAACTGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAAAGTGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTAAAAAATCTCTACAGCAGTACTGAGAGATTCTGGAATTCGACAATACAGGCTGGAGGAGTGGACATATTACTGAAGTTACTGACAACAGGACAGTCTAGCACATTAGCGAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCATCTTTTTGTTCAAAGGTATTGACAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTATTAAATCTCTATCTGCCCAGTGCCAAGATGCAAGGAAAGAGATAGCCAATTATAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCAATACAGGAGAATGCTATGTGTGCTCTTGCAAACATATCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCTCCTCACCGACCCAAACTTCCGACACATTGGGAGCTTTAGCTTCAGCTCTTATGATATATGACGATAAGGCAGAATCTACTAGAGCATCAGATCCTTTGGCTGTTGAGCAGACATTACTCGAGCAATTTAAACCTCACTCGCCCTTCCTTGTGCAGGAAAGGACCATCGAAGCTCTGGCCAGTTTGTATGGAAATCCTATACTCTCACTTAAACTTGCAAATTCTGATGCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTCTTAAAAGCTCTCTTGACACTGTGCAATAGTGAATGCAGTCTATGGCGTGCGCTTCAAGGCCGCGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGCGCTGTTGCCCTGCTCTGTCTTTTGTCTAATGAAAATGATGAAAGTAAATGGTCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCGAAGGAAGACTCGGCAACAATCCTCAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGCGCTGATGCAGTTCCTGCGCTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCTAAGACCTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATCTACCTGAGTCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTTAGTGACCTTCTACATGAAGGTAGTGCTGCTAGTGATGCAATCGATACAATGATAAAATTATTGAGCTGCACAAAAGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCAGGAATTTTTGAAACAAGGAAAGATGTGCGAGAAAGTAAAATTGCTGTTAAAACTCTTTGGTCAGCCATCAAGTTGCTTAATGTTGAATCTAGAAGTATCTTAGTGGAGTCCTCACGCTGCCTAGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGAGGTAGCTATTAATGCGAGAGATGCATTATCCTCCCTAGTTACACTAGCTAGCTCTTCAGTTTTGGAGGTAGCAGAGCTGGCAACTTGTGCTGTGGCAAATCTTCTTTTGGATAGTGAAGTTGCTGAGAATGCTGTTGTGGAGGAAGTTATTTTGCCTGCTACCAGAGTATTGCGTGAAGGCACAAAATATGGAAAAACACATGCAGCAGCAGCAATTGCTCGCCTTTTGCATTCTAGGCAAGTTGATTGTGCTGTAAATGACTGTGTGAATCGTGCTGGTACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTATTGATGAACCTGTTGCAACAACAGAGGCTCTAGAAGCACTTGCCATTCTATCAAGGTTGAAAGAGACCACTGCAATTAGTAAACCTGCTTGGATGATTTTGGCCGAATTTCCTAAAAGCATAAGCCCAATAGTTCTGTCAATTTCCGATTCAACACCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGAATGTTGCTACTGCATCTGGATGCATATCTTCAATAGCTAAGAGGATAATCAATTCCACTTCTACAAATCTGAAGGTCAAAATTGGGGGAGCTGCAATTCTGATTTGTGCTGCTAAAGAAAATCATCAAAGGCTTGTGGAGGATCTAAATTTATCAAACTTGTGTGCAGATCTTGTACAGTCGCTCGTTGATATGGTTATTTCTTCACAGGCTACTTTGATCAATCAGGACGATGTCAACAAGGAACTCATCAGCATTTGCAGGCATACAAAAGACGCCAATGATGGTAAATTGACAAACAGCATATCTGGTGCTGATGTAGCTTTATGGTTACTCTCTGTTCTTGCTTGTCATGACGAAAAATGTAGAATTTCAATAATGGAGGCTGGAGCGATTGAGATTTTCACCGACATGATTGCAAATTTTTCCTCACAATACAATCAGATTGACGATAAAGAAGATAGCAGCATGTGGATTTGTGCTATGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACAATGAAATCTATACCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAGTCAATAGCTAGCTTAGTCTGTAACGGTAGCAGGGGAACTCTTCTATCTGTTGCAAATTCTGGGGTGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATGTTGATATACGGGATCTTCTGGAACTGTCTAATGAATTTTCTTTGGTGCCTTTTCCCGATCAAGTTGCTCTTGAGAGGCTGTTTAGAGTTGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCGATTCCAGATCGCCCAGGAGCACCATTTCTAGCACTAGGGATTTTGACTCAGCTTGCTAGAGATTGCCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCATAGAGGCACTTACTAAGTATCTTTCACTGGGTCCACAAGATGCCATTGAAGAAGCTGCTACAGATCTGTTAGGTATTTTGTTTAGCAATGCTGAGATAAGGAGACACGAGTCAGCCTTTGGTGCTGTTACTCAACTCGTAGCCGTGTTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCCTTGGAAAGTTTATTCTCAGCTGACAACATTAGAAATGCAGAGACTGCTCGGCAAGCTGTTCAGCCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAACATGCTGCGATTTCTGCGTTAGTTAAGTTACTGAGTGAAAATCCTGCAAGAGCACTTGCTGTTGCTGATGTTGAGACGAATGCCATTGATGTTCTTTGCAAAATTCTTTCATCAGGTTGTTCAATGGATCTCAAAGGGGATGCTGCCGAATTATGCTGCGTTCTTTTTGGAAATACAAGGATTCGATCCACAGTGGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTAACTGAGTTTAGTCCTGCTCATCATTCAGTTGTACGGGCATTGGATAGGCTTGTTGGCGATGAGAAATTGGCTGATTTGGTTGTTGCACGTGGTGCAGTTATTCCTCTTGTTGGCCTACTTTTTGGTACGAACTTTGTACTCCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGATCGACCTTCTTGTAAAATGGAAATGGTGAAAGCTGGTGTCATTGAATGCATACTTGACATCCTTCATGAAGCACCTGATTATCTCTGTGCAGCTTTTGCTGAATTGTTACGTATATTGACCAACAATGCTAGCATAGCCAAAGGATCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCCAATGGACAACATAGTGTGTTGCAGGTTTTGGTTAATATCTTAGAGCATCCGCAGTGCCGTGCTGATTATAGATTAACTTCTCACCAAACTATTGAACCGCTCATCCCCTTGCTTGATTCTCAAACAGATACAGTGCAGCAGTTGGTTGCCGAGCTTCTATCCCATTTACTTTTAGAAGAAGACCTTCAGAAGGATCCAGTGACACAACAAGTAATTGGCCCTCTTGTGCGAGTTCTTGGTTCAGGCATGCAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCAGATGTATGGCCCAATGAAATTGCAAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCCGACCCTTCCATTCCTCATGTTTTATGGGAATCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCGGAATTCTACTTAGAAATTCCTGTTGCTGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGAGCACAATTAGTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGAAACTAGTGCAGCTGCGGAGGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTTACATCTCATCAGTGTGAGGACACTGCCGCAAGACTCTTAGAAGTATTGCTTAACAATGTAAAGATTAGAGAAACAAAGGTCACTAAATCAGCCATCTTACCATTATCCCAGTACCTGTTGGATCCTCAAACTCAAGCACAACAAGCGAGGTTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGAGTCTTGCTCGGACAGCTGATGCAGCCTCAGCTTGTCATGCTTTAGTGAATGTGCTTATAGACCAACCCACTGAAGAAATGAAAGTTGTTGCCATATGTGCTCTGCAGAACCTTGTGATGCACAGTCGAGCAAATAAAAGAGCAGTTGCAGAGGCCAGTGGGGTTCAGGTTATACTGGATCTGATTGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCCGTTAGTGAAACAGTCAGAGCGATAACTGCTGCTATCGAAAAGGATTTATGGGCTACTGGAGCGGTGAACGACGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCGCACACCTGAGAGCAACTGAACCAGCAACACTTAGCATTCCACATCTGGTTACATCCTTAAAGTCAGGTTCAGAGGCCACTCAGGAAGCTGCGTTAGATGCACTTTTTCTGCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTTTCAAGAGCCCAGTCCATAGCAGCCGCAGATGCTATTCCTATGTTACAGTACTTACTCCAGTCTGGCCCACCTCGGGTTCATGAGAAGGCAGAGTTTCTGTTGCAGTGTTTACCGGGGACATTGGTGGTAATTATCAAGTGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCGAGTGTTTACTGCAAGCTTACACTTGGAAACAATCCTCCAAGGCAAACCAAGGTGGTCTCAACCGGCCCTAACCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTCGAGAGTCCTCCAAAAGGCCAGAAGCTTCAAATTTCTTGCAAAAACAAGAGTAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGAGCGGGTGGTGATGCTGGGGACAGTATCGGGAGAGTACACATTGTTGCCAGAAAGTAAAAGCGGTCCTTCAAGAAATTTAGAAATAGAATTTCAATGGTCTAACAAATGA 6459 0.4309 MATALTWRFASNNGTTLAANDLERNGDGKAQDSEAPTPHSVLKMGLRERSSSGMEDTDGTLASIAQCIEQLRHNSSSMQEKAHSLKQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKSGSVVDSLLTGALKNLYSSTERFWNSTIQAGGVDILLKLLTTGQSSTLANVCFLLACMMMEDASFCSKVLTADATKQLLKLLGPGNDAPVRAEAAGAIKSLSAQCQDARKEIANYNGIPALINATIAPSKEFMQGEYAQAIQENAMCALANISGGLSYVISSLGQSLESCSSPTQTSDTLGALASALMIYDDKAESTRASDPLAVEQTLLEQFKPHSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWSITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLHEGSAASDAIDTMIKLLSCTKEETQAKSASALSGIFETRKDVRESKIAVKTLWSAIKLLNVESRSILVESSRCLAAIFLSIKENREVAINARDALSSLVTLASSSVLEVAELATCAVANLLLDSEVAENAVVEEVILPATRVLREGTKYGKTHAAAAIARLLHSRQVDCAVNDCVNRAGTVLALVSFLDSAIDEPVATTEALEALAILSRLKETTAISKPAWMILAEFPKSISPIVLSISDSTPVLQDKAIEILSRLCKDQPSVLGENVATASGCISSIAKRIINSTSTNLKVKIGGAAILICAAKENHQRLVEDLNLSNLCADLVQSLVDMVISSQATLINQDDVNKELISICRHTKDANDGKLTNSISGADVALWLLSVLACHDEKCRISIMEAGAIEIFTDMIANFSSQYNQIDDKEDSSMWICAMLLAILFQDRDIIRAHATMKSIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADVDIRDLLELSNEFSLVPFPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTQLARDCPSNKIVMVESGAIEALTKYLSLGPQDAIEEAATDLLGILFSNAEIRRHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFSADNIRNAETARQAVQPLVEILNTGLEREQHAAISALVKLLSENPARALAVADVETNAIDVLCKILSSGCSMDLKGDAAELCCVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAHHSVVRALDRLVGDEKLADLVVARGAVIPLVGLLFGTNFVLHEAISRALVKLGKDRPSCKMEMVKAGVIECILDILHEAPDYLCAAFAELLRILTNNASIAKGSSAAKVVEPLFFLLTRQEFGPNGQHSVLQVLVNILEHPQCRADYRLTSHQTIEPLIPLLDSQTDTVQQLVAELLSHLLLEEDLQKDPVTQQVIGPLVRVLGSGMQILQQRALKALVSIADVWPNEIAKEGGVIEISKVILQADPSIPHVLWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSESTISGALNALLVLESDDETSAAAEAMAESGAIEALLELLTSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNESLARTADAASACHALVNVLIDQPTEEMKVVAICALQNLVMHSRANKRAVAEASGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYAVSETVRAITAAIEKDLWATGAVNDEYLKALNSLFSNFAHLRATEPATLSIPHLVTSLKSGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPMLQYLLQSGPPRVHEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVYCKLTLGNNPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLQISCKNKSKMGKSSFGKVTIQIERVVMLGTVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2936 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Mtr3g2936 2152 Gene3D - 654 876 IPR011989 -
Mtr3g2936 2152 Gene3D - 450 653 IPR011989 -
Mtr3g2936 2152 SUPERFAMILY ARM repeat 1578 2029 IPR016024 -
Mtr3g2936 2152 SUPERFAMILY ARM repeat 1406 1657 IPR016024 -
Mtr3g2936 2152 Coils Coil 298 325 - -
Mtr3g2936 2152 Pfam Armadillo/beta-catenin-like repeat 105 135 IPR000225 GO:0005515
Mtr3g2936 2152 Pfam Armadillo/beta-catenin-like repeat 527 566 IPR000225 GO:0005515
Mtr3g2936 2152 SMART C2_3c 2032 2128 IPR000008 -
Mtr3g2936 2152 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2152 - -
Mtr3g2936 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Mtr3g2936 2152 Coils Coil 68 88 - -
Mtr3g2936 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Mtr3g2936 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1195 1239 IPR000225 GO:0005515
Mtr3g2936 2152 CDD C2 2033 2131 - -
Mtr3g2936 2152 Pfam C2 domain 2031 2124 IPR000008 -
Mtr3g2936 2152 SMART arm_5 1228 1269 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1397 1437 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 568 608 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 647 687 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1608 1647 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 312 361 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 269 310 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 526 566 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1732 1770 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1310 1351 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1036 1086 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 137 177 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1480 1520 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 94 136 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1564 1606 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 731 772 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1815 1856 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1183 1226 IPR000225 GO:0005515
Mtr3g2936 2152 SMART arm_5 1438 1478 IPR000225 GO:0005515
Mtr3g2936 2152 SUPERFAMILY ARM repeat 578 1519 IPR016024 -
Mtr3g2936 2152 SUPERFAMILY ARM repeat 1177 1362 IPR016024 -
Mtr3g2936 2152 SUPERFAMILY ARM repeat 66 393 IPR016024 -
Mtr3g2936 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2149 IPR035892 -
Mtr3g2936 2152 MobiDBLite consensus disorder prediction 18 37 - -
Mtr3g2936 2152 Gene3D C2 domain 2031 2152 IPR035892 -
Mtr3g2936 2152 Gene3D - 1365 1677 IPR011989 -
Mtr3g2936 2152 Gene3D - 54 411 IPR011989 -
Mtr3g2936 2152 Gene3D - 877 1364 IPR011989 -
Mtr3g2936 2152 Gene3D - 1679 2030 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2936 Mtr-Chr3 43228507 43238926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2936 489 621 U-box Gene Family AT2G23140 40.000 1.36e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2936 - - gmx:100816765 3563.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2936 3 43228507 43238926 Mtr3g2936 3 43228507 43238926 ECH
Mtr8g3171 8 42258439 42268331 Mtr3g2936 3 43228507 43238926 PCT