Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2903 ATGTCTTACCCTAACCCAACTATAAACATGTCTAATCCGAACCTAGATTCCCATCACACTACCCAGATACTTCAACCACAACAAAATCCAAGTAACACCCCCGACCCTCAGGTTCCGCTTCGGAATCTATCCTTGGTTCAGACGAGCATCGATTCTCTCCGAACCCTCCTGTCCCAATCCATCACCACCAACGCTCCTGTCACCAACGATCAATTAACCGCCGTCTCCAACCAAATCTTCACCGTCCTCCACCATACCATAGTCAACGCCGCCGCCCTCGTTCCTGGCGTCTCCGTCTTCCCCTCCGCCACCTTCGATTCTTTCAACAACAACCCCCTCGCCGCCGTGGAAGATTCCGATTGCGAAATTGTGGAGCTCGACGCCATGGAATTGCTAGCTGAACATCTCCACTTTTGCGAGATATGCGGCAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGAGAGCTCACGGGAATCAATTCAAGACGCCGGAAGCTTTAGCGAAGCCTTTAAACATGGTCCGTCGTCCAACGCAATTCTCGTGTCCGTTTGAAGGATGTAACAGAAACAAAAAGCATAAGAAATTCAAAGCATTGAAATCGGTGATTTGTGTGAAGACCCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTAATCTTTGTCGTAAGAAGAATTATTCAATGCTTTCGGATTTGAAGAGTCATATGAGGCAATGTGGTGAGTCTAAGTGGAAGTGTTCTTGTGGGAGTACTTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTGTGTTGGAAGATGAGGTGAAAGGGAAGCAAGTTGTGGCTGAGGAGAATGAAGATCCTATGGAAATGGCATTGAGTAAAGATGATGAAATTGGTATGGATGAAGAGTTCTTTCATGATTTTGGGTCTATTGATAACTATTGTTTGGATGAAGTTTTGGGATTTCGTCGTAGCTAG 1002 0.4611 MSYPNPTINMSNPNLDSHHTTQILQPQQNPSNTPDPQVPLRNLSLVQTSIDSLRTLLSQSITTNAPVTNDQLTAVSNQIFTVLHHTIVNAAALVPGVSVFPSATFDSFNNNPLAAVEDSDCEIVELDAMELLAEHLHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLNMVRRPTQFSCPFEGCNRNKKHKKFKALKSVICVKTHFKRSHCPKMYSCNLCRKKNYSMLSDLKSHMRQCGESKWKCSCGSTFSRKDKLFGHVALFEGHMPAVVLEDEVKGKQVVAEENEDPMEMALSKDDEIGMDEEFFHDFGSIDNYCLDEVLGFRRS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2903 333 SMART c2h2final6 220 241 IPR013087 -
Mtr3g2903 333 SMART c2h2final6 137 159 IPR013087 -
Mtr3g2903 333 SMART c2h2final6 182 215 IPR013087 -
Mtr3g2903 333 Gene3D Classic Zinc Finger 218 268 - -
Mtr3g2903 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Mtr3g2903 333 Pfam Zinc-finger of C2H2 type 138 157 - -
Mtr3g2903 333 Gene3D Classic Zinc Finger 137 160 - -
Mtr3g2903 333 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Mtr3g2903 333 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 96 IPR044300 GO:0010044|GO:0010447
Mtr3g2903 333 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 116 329 IPR044300 GO:0010044|GO:0010447
Mtr3g2903 333 MobiDBLite consensus disorder prediction 1 38 - -
Mtr3g2903 333 SUPERFAMILY beta-beta-alpha zinc fingers 133 160 IPR036236 -
Mtr3g2903 333 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 116 329 - -
Mtr3g2903 333 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 10 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2903 Mtr-Chr3 42951078 42952345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2903 122 280 C2H2 Transcription Factor Family AT1G34370 57.738 4.62e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g2903 zf-met 0.0027 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2903 - - cam:101491258 424.476