Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2887 ATGAAGAGACTCAACAACACTTCAGATTCTTCTTCAACACCTCTCATCACAATCTCTCCATCAACAGAGGAACATAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGATGTGTTGAAGAAACTGGTCATCATTCTGAGAAGAAACGTAGACTAAGAGTGGATCAAGTTAAGGCTTTGGAGAAAAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCCATTGAACTTGGGTTGCAGCCTAGACAAGTAGCTGTTTGGTTCCAAAACAGGAGAGCAAGATGGAAGACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAGTTTGATGCAATTGCTCAAGATAACAAAGCTTTTCACAAGGAGATTAAGGAATTGAAATCAAAGCTTGGAGAAGAAGAAAAAAGCACAATCAATGTTTTGGTGAAGGAGGAGTTAACCATGCTTGAATCTTGTGATGAAGACAAGCATAACCCATCTTCAGAAACATCAAATCCTAGTTCAGAATCCAAAGATCACTTGGATTATGACTGCATAATCAACAACAATGATGTTGGTATTGGTGAAACTTCTTCACTCTTTCCGGTAGACCTGAAAGACGGTTCTTCAGACAGCGACTCTAGTGCAATTTCTTCATCCGGGGTCCTTCAAAGTCAGCAGCACCTTTTGTTGTCTCCTGAATCTTCCTCCATGAATTGTTTCCAGTACCAGAAATCTTATCATGTGAAGATGGAGGAGCACAATTTCTTAAGTGCGGATGAGGCGTGCAACTTTTTCTCCGACGAGCAAGCACCAACCCTACAATGGTACTGTCCTGACCAGTGGAGTTAA 909 0.4026 MKRLNNTSDSSSTPLITISPSTEEHSPRNKHVYGMEFQSMMLDGFEEEGCVEETGHHSEKKRRLRVDQVKALEKNFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNKAFHKEIKELKSKLGEEEKSTINVLVKEELTMLESCDEDKHNPSSETSNPSSESKDHLDYDCIINNNDVGIGETSSLFPVDLKDGSSDSDSSAISSSGVLQSQQHLLLSPESSSMNCFQYQKSYHVKMEEHNFLSADEACNFFSDEQAPTLQWYCPDQWS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2887 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 294 IPR045224 GO:0003700
Mtr3g2887 302 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Mtr3g2887 302 Coils Coil 114 134 - -
Mtr3g2887 302 Coils Coil 142 162 - -
Mtr3g2887 302 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Mtr3g2887 302 SUPERFAMILY Homeodomain-like 50 117 IPR009057 -
Mtr3g2887 302 SMART HOX_1 58 119 IPR001356 GO:0003677
Mtr3g2887 302 MobiDBLite consensus disorder prediction 177 199 - -
Mtr3g2887 302 Gene3D - 54 122 - -
Mtr3g2887 302 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Mtr3g2887 302 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Mtr3g2887 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 294 - -
Mtr3g2887 302 MobiDBLite consensus disorder prediction 1 23 - -
Mtr3g2887 302 CDD homeodomain 60 116 IPR001356 GO:0003677
Mtr3g2887 302 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Mtr3g2887 302 Pfam Homeobox associated leucine zipper 115 156 IPR003106 GO:0006355|GO:0043565
Mtr3g2887 302 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2887 Mtr-Chr3 42789295 42791665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2887 1 302 Homeobox Transcription Factor Family AT4G40060 46.497 5.82e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr3g2887 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2887 K09338 - gmx:100777924 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2887 3 42789295 42791665 Mtr3g2887 3 42789295 42791665 ECH
Mtr8g3106 8 41623216 41625782 Mtr3g2887 3 42789295 42791665 PCT