Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2886 ATGAAGAAAACTTTTTCTACCAACCACACCCCCCATTTCCACCGTCAAACCCCTCACTCCGCCTGCCCCGTTTACCGTCACCGGAGACCTGGATTTTACTCCAACCACCGTTTCGACCGCCCTCCGGAGCGAAATCCACCTCACCGTCCTCCCAATTTCATCCTCAAGCTCCACCTCGGCCGTCGTGCACTCAACCGCGACGATGTCGACTCTTTGATCGGTAAATGTAAACCCAACCCTGATAATTATTGTTTCTACCCCTGCGACGGTGTTGCTGCGTCGCTCAATTTTCTGCAATGGACGGATGCTCGTGATGCTGTTGTTTGGTTCTGGGAATCGAGGATTTCTGGAGGTCATGATTTTACGCCGGAGTTGATTTCGAATGTTATGGTTCCTTCTGATACTGTTGAACTGGAAGGGAGTCTCAGAAGGGTTTTTGCAAGCCATGTGAAGGAGTTGATGGAAGGGAAGGAAGTGAAGAAGTGGGTGGAGGAGTGGGATCGTGTATCAAAGGAGATTTCGCGTGTTGTGAGTTTGTTGGGTAAGCCTTTTCCGATTAGAGTGCAGGAGCAGAATATTCAGATGAAGAAAGGGCTTGATGAGGAAAAGAGTTTGATTGAGAGGAGATTGAAGGAGTTCGAGTTTGCTATGGAGTGTATTCTGCAGCATTTGGAAGAGGATAGTAAGGTGGACAGTGGTGATGATTTTGTTCCCGTGTTTAGGTTTGGTGGAGGTTTTGATTGGGGGAAGATTCATAGCCTCATCGTTAGAGAACGGCGTAGACTCGAAGAAGGATTACCCATTTATGCTTACCGGAGGGAGATTCTTCAACAAATTCATCATCAACAGATAACAGTGTTGATTGGAGAGACTGGTTCTGGGAAGAGTACTCAGATAGTACAGTTTCTCGCGGATTCTGGCATTGGGGCTGATGAGACAATTGTGTGCACTCAGCCTCGCAAAATTGCTGCCAAGTCATTGGCTGAAAGGGTTCAGGAAGAAAGTAAAGGGTGTTATGAAGAAAATTCGATCCAGTGTTATTCGACATTTTCATCCTGCCAGAAATTTGATGATTCCAGGATAGCATTCATGACCGATCACTGTTTATTGCAGCAGTACATGAGTGATAGGAATTTGTCAGGGGTCTCGTGTATCATAGTTGATGAGGCACATGAAAGGAGCTTAAATACTGATCTACTGTTGGCGTTGATTAAGAATTTACTTTGTAAGAGGGTTGAAATGCGACTTATCATCATGTCTGCTACTGCCGATGCTAAGCAGCTATCTGATTATTTCTATGGCTGTGGAATATTCCATGTGCTTGGGAGAAACTTCCCTGTGGAGGTGAGGTACGTTCCTTCTGAATATGGAGAACATTCTGGTTCTGCTGTTTTGGCCCCATATGTTTTTGATGTTGTCAAACTGGCAACCGAGATTCACAAAACAGAGAAAGAAGGAGCTATTCTTGCCTTTCTGACCTCACAGGTAGAAGTAGAATGGGCCTGCGAAAACTTTAAAGCCCTATCTGCCGTCGCTCTGCCCTTGCATGGGAAACTTTCGTCCGAAGAGCAATTTCATGTTTTCCAGAAATACCCTGGAAAAAGAAAAGTGATATTTTCGACGAATCTTGCAGAGACATCAATTACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGGTTGGTTAAAGATTGCCGATTTGATCCTTGCACTGGGATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAAAGGGCTGGTCGTGCTGGGAGGACCGAGCCTGGCAGATGCTATAGGATGTACTCAGAAGCTGATTATAGGTCTATGGAACTAAATCAAGAACCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAAGATCCTTGCTCTAGGGGTGAAGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGCCCCAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAATTAGGATTCATTAAACTGAACAACAATGTTCATGAGCTAACTTATGAAGGTAGGTACTTGGCAAGAATGGGGATTGAACCTAGGCATGGTAAACTTATTCTTGGCTGTTTCCGACTAGGTTTGGGTAGAGAAGGCATTGTCCTTGCTGCCACGATGCCCAATGCTAGTAACATATTTTGCAGATTTGGTAATGAAGGTGACAAACAAAGATCTGATTGTCTCAAAGTGCAATTTTGCCATCCTGATGGTGACCTTTTTACTCTTCTCTCGGTATACAAGGAATGGGAAGCTCAGCCTCGAGATAGGAGGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATGTATGAGGAGATGCCAAGACACAGTTTTGGAGTTAGAATCTTTCCTAGAGCGTGAACATGGCTTTGTTGTTCCAAGTTACTGGCGTTGGAACCCTCATACGCCTTCTGTTCATGATAAGAATTTGAAAAAGGTTATACTGTCCTCACTTGCTGAAAATGTAGCCATGTTCTCTGGACGCAATCAACTTTATGAAGTAGCCCAAACTGGACAACATGTTCAACTTCATCCATCTTCATCCTTGCTTGTATTTGCTCAGCGGCCTAGTTGGGTAGTTTTTGGTGAGCTTCTCTCAGTGTCTAATGAATATTTGGTCTGTGTGAGTGCTGTTGACTTTCAATTATTATACAGCCTTCAACCTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAGAGGAAGTTACAAACGAAGACATTGACTGGTTTTGGAACTATTCTTCTCAAGAGATTTTGTGGGAAAGGCAACGGTAATATGTTTGGTCTTGCTTCACGTATTAGGAAAGCTTGTATGGATGAAAGAATCTTTGTTGAAGTAAATATTGACGAGAATCTCATCCAGTTATATGCCACTTCACATGATATGAATACAGCTAGTATGATGGTGAATGATGTTTTAGAATATGAGAAAAAGAGGTTACGCACTGAATGTATGGAAAAATGTTTGTATCATGGGTCAGGTTCCTCATCACCTATAGCATTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGAGAAGCATTCATTGAGTGTTGATGTGTGTCACCCAAACATAAATGAAATTAATGATAAGGAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGGTTGTATATGTGCAGTGTACAAGTTCCCTGGCATGGTGAAGGATGTTGAGGATAGAGAAAAGTGGGGCAAGATAACATTTTCGTCCCCTGATGCTGCCAAAAGAGCTGCAGAGCTGGATGGAGAGGAGTTTTGCGGCTCCTCCTTGAAAATACTTCCTTCACATTCAGTTATTGGAGGGGATAAAACATTTTCATTTCCTGAAGTGAAAGCAAAAATTTATTGGCCTCGTAGATTTAGCAAAGGATTTGGTATAGTTAAATGTGATAAAAATGATGTTGATTTCATCTTGAGAGATTTTTATAACCTTGCAATCGGAGGGAGGTATGTCCGCAGTGCACTCAGTAATAAGTCCATGGACAGTATTGTGATAAGTGGGCTTGACAAAGAACTTCTAGAAACTGAAATTTTGGATGTACTAAGAACTGCTACAAGTAGAAGGATTCTAGACTTTTTCTTGGTGAGGGGAGATGCTGTTGGAAATCCGTCATGCAGTGCTTGCGAAGAGTCGCTCTTTAAAGAAATTTCCCCCTTAATTCCCAAAATAAACCCTCACATTAGTTCTTGCCGTGTTCAGGTATTTCCACCTGAGCCGAAAGATTCTTTCATGAGAGCTTTAATTAATTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTCTGGAGAAAATTGAAGGAAAGGTGTTACCTGGATGTCTTTCTTGGCAGAAGATAAAGTGCGAGCAGTTGTTTCATAGTTCCTTGATATTTCCTGCTCCAGTATATCATGTTATTGCAGAACAACTGGAAAAAATACTCACAAGCTTCAACAATTTAAAAGGTCTTGAGTGGAACCTAAACAGAACTGCCAACGGTTCCCACCGATTGAAGATAACAGCCAATGCCACAAAGACTGTGGCAGAAGTTAGGAGGCCTCTGGAAGAACTGTCGAGAGGGAAAGTCATTGACCATGACAGCATCACTCCTGCAGCTCTACAGCTCATGTTGTCCAGAGATGGCTTTAATCTTAAAAGCTCTATACAGCAAGAGACAAGAACTTACATTATTTTTGACAGGCAAAATCTGAACTTACGGATTTTTGGTTCACCCAACAGGATTGCTTTGGCTCAGCAGAAGTTAATTCAATCTCTACTCTCCCTCCATGAAAAAAAGCAGTTAGTAATCTCTCTGAGAGGGAAGGACCTACCTTCTGACTTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTTCACGGGCTAAAAGAGAAGGTACCTGGGGCTGATCTCGAACTTAACACCCGCCAACAAATAATCTTTCTTCATGGCAACAAGGAGTTGAAACCAAGAGTGGAGGAAATAACTCTGGAAATTGCGCGTTCAAGCCATCATTTAGTTGAGAGACTTGACACTGGACCTAGTTGCCCAATTTGCCTGTGTGAGGTTGAGGATGGATATAAACTTGAAGGCTGTGGTCATTTGTTCTGCCGGCTGTGTCTGGTGGAGCAATGTGAATCTGCTATTAAGAACCAAGGCAGTTTCCCAATATGCTGTGCTCACCAAGGCTGTGGAGATCCTATTTTGCTTACAGATTTTAGAACTCTCCTGTCAAATGATAAGTTGGACGAACTTTTCAGGGCTTCTTTGGGAGCTTTTGTAGCTTCGAGTTCGGGAACTTATAGGTTTTGCCCGTCTCCTGACTGCCCTTCAGTTTATCGAGTTGCAGATTCCGACACAGCTAGTGAGCCATTTGTTTGTGGGGCATGTTATTCAGAGACATGTACCAAGTGCCACTTAGAGTATCATCCATACCTTTCATGCGAGAGATACCGAGAACTCAAGGATGACCCAGACTCATCTCTGAAGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGTTTTGCTTGTGGGCAAATAATTGAGAAGATAGATGGGTGCAATCACGTTGAGTGCAAGTGCGGAAAACATGTCTGCTGGGTTTGCTTGGAGATCTTTACAAGTAGTGATGAATGTTATGATCATTTGAGAACTATACACATGACCATATAA 5196 0.4276 MKKTFSTNHTPHFHRQTPHSACPVYRHRRPGFYSNHRFDRPPERNPPHRPPNFILKLHLGRRALNRDDVDSLIGKCKPNPDNYCFYPCDGVAASLNFLQWTDARDAVVWFWESRISGGHDFTPELISNVMVPSDTVELEGSLRRVFASHVKELMEGKEVKKWVEEWDRVSKEISRVVSLLGKPFPIRVQEQNIQMKKGLDEEKSLIERRLKEFEFAMECILQHLEEDSKVDSGDDFVPVFRFGGGFDWGKIHSLIVRERRRLEEGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQFLADSGIGADETIVCTQPRKIAAKSLAERVQEESKGCYEENSIQCYSTFSSCQKFDDSRIAFMTDHCLLQQYMSDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSDYFYGCGIFHVLGRNFPVEVRYVPSEYGEHSGSAVLAPYVFDVVKLATEIHKTEKEGAILAFLTSQVEVEWACENFKALSAVALPLHGKLSSEEQFHVFQKYPGKRKVIFSTNLAETSITIPGVKYVIDSGLVKDCRFDPCTGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRMYSEADYRSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLGFIKLNNNVHELTYEGRYLARMGIEPRHGKLILGCFRLGLGREGIVLAATMPNASNIFCRFGNEGDKQRSDCLKVQFCHPDGDLFTLLSVYKEWEAQPRDRRNKWCWENSINAKCMRRCQDTVLELESFLEREHGFVVPSYWRWNPHTPSVHDKNLKKVILSSLAENVAMFSGRNQLYEVAQTGQHVQLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFQLLYSLQPPPLFDVSKMEERKLQTKTLTGFGTILLKRFCGKGNGNMFGLASRIRKACMDERIFVEVNIDENLIQLYATSHDMNTASMMVNDVLEYEKKRLRTECMEKCLYHGSGSSSPIALFGSGAEIKHLELEKHSLSVDVCHPNINEINDKELLMFLEKNTSGCICAVYKFPGMVKDVEDREKWGKITFSSPDAAKRAAELDGEEFCGSSLKILPSHSVIGGDKTFSFPEVKAKIYWPRRFSKGFGIVKCDKNDVDFILRDFYNLAIGGRYVRSALSNKSMDSIVISGLDKELLETEILDVLRTATSRRILDFFLVRGDAVGNPSCSACEESLFKEISPLIPKINPHISSCRVQVFPPEPKDSFMRALINFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIAEQLEKILTSFNNLKGLEWNLNRTANGSHRLKITANATKTVAEVRRPLEELSRGKVIDHDSITPAALQLMLSRDGFNLKSSIQQETRTYIIFDRQNLNLRIFGSPNRIALAQQKLIQSLLSLHEKKQLVISLRGKDLPSDLMKQVVKNFGPDLHGLKEKVPGADLELNTRQQIIFLHGNKELKPRVEEITLEIARSSHHLVERLDTGPSCPICLCEVEDGYKLEGCGHLFCRLCLVEQCESAIKNQGSFPICCAHQGCGDPILLTDFRTLLSNDKLDELFRASLGAFVASSSGTYRFCPSPDCPSVYRVADSDTASEPFVCGACYSETCTKCHLEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSCFACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTSSDECYDHLRTIHMTI* 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2886 1731 ProSitePatterns Zinc finger C2H2 type domain signature. 1707 1728 IPR013087 -
Mtr3g2886 1731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1520 1599 IPR013083 -
Mtr3g2886 1731 Gene3D - 619 662 IPR042035 -
Mtr3g2886 1731 Pfam DEAD/DEAH box helicase 272 428 IPR011545 GO:0003676|GO:0005524
Mtr3g2886 1731 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 821 894 IPR011709 -
Mtr3g2886 1731 ProSitePatterns Zinc finger RING-type signature. 1539 1548 IPR017907 -
Mtr3g2886 1731 SUPERFAMILY RING/U-box 1605 1660 - -
Mtr3g2886 1731 CDD SF2_C_RHA 445 605 - -
Mtr3g2886 1731 ProSiteProfiles Zinc finger RING-type profile. 1523 1565 IPR001841 -
Mtr3g2886 1731 Gene3D - 444 616 IPR027417 -
Mtr3g2886 1731 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1556 1647 - -
Mtr3g2886 1731 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 91 1483 - -
Mtr3g2886 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 774 IPR027417 -
Mtr3g2886 1731 SMART ibrneu5 1590 1655 IPR002867 -
Mtr3g2886 1731 SMART ibrneu5 1656 1720 IPR002867 -
Mtr3g2886 1731 SMART ultradead3 264 450 IPR014001 -
Mtr3g2886 1731 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 383 392 IPR002464 -
Mtr3g2886 1731 SMART ha2_5 657 753 IPR007502 GO:0004386
Mtr3g2886 1731 ProSiteProfiles TRIAD supradomain profile. 1519 1727 IPR044066 -
Mtr3g2886 1731 SUPERFAMILY RING/U-box 1522 1591 - -
Mtr3g2886 1731 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 276 441 IPR014001 -
Mtr3g2886 1731 MobiDBLite consensus disorder prediction 1 20 - -
Mtr3g2886 1731 SUPERFAMILY RING/U-box 1677 1725 - -
Mtr3g2886 1731 Pfam Helicase associated domain (HA2) 658 752 IPR007502 GO:0004386
Mtr3g2886 1731 Pfam Zinc finger, C3HC4 type (RING finger) 1523 1559 IPR018957 GO:0046872
Mtr3g2886 1731 Pfam IBR domain, a half RING-finger domain 1599 1655 IPR002867 -
Mtr3g2886 1731 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 637 IPR001650 -
Mtr3g2886 1731 Gene3D - 252 443 IPR027417 -
Mtr3g2886 1731 PANTHER ATP-DEPENDENT RNA HELICASE 91 1483 - -
Mtr3g2886 1731 PANTHER ATP-DEPENDENT RNA HELICASE 1556 1647 - -
Mtr3g2886 1731 CDD DEXHc_RHA-like 283 440 - -
Mtr3g2886 1731 Gene3D - 1652 1729 - -
Mtr3g2886 1731 Pfam Helicase conserved C-terminal domain 478 596 IPR001650 -
Mtr3g2886 1731 SMART helicmild6 499 597 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2886 Mtr-Chr3 42764055 42770844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2886 1538 1714 C3H Transcription Factor Family AT2G31770 25.824 5.16e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2886 K12818 - gmx:100810008 2632.44