Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2882 ATGCCCTTATTTGCACTCATCCTCCACCATTTCTCTTCCTACGACCACAATCGCCTTAATCCCATCACCGCTGCCGTCGACCTATTCCGCCGTGAATTCAACCGTCAAATCATCCACAAATGCCCTGTCCTCGTTTACTCCGCCGTGAAAGACCACAAAATAGGTAAAGCCACATTTGAATGTGCTGTTTGCTTGAATGAGTTTCAACACAATGATAAAATAAGGTTGTTGCCAAAATGTTACCATATTTTTCACCAAGATTGTATTGATGTTTGGTTATTATCTCATATGAATTGTCCTGTATGTCGCTCCAAACTTACCCCCGATGTTCCCGACATTGCAATCCCTATCGATGCCGCGACGGAATCAACGGAGCAACAACAAGAAGAGAGCAACACCGTTAGGGTTTCAGAAGAAGAGGTAGTAATGGCTGATGAAGACATTTTCCGTTTACGGGAATTGAGAATGTTGGACAAGTTTCCTTTACCGAGGTCACATTCAACGGGTCATTCTTTAGCGGAAAATGAGGAGAAAGTAGAGAATAATCATGATGATGATGTTGTTCTTCATCTGCCACCTGCATGGAGTTCAAAGAGGGTATGGTATAGAAGTAACAACAACGTGGAGCGGTGGTCTTTGTCCATGACTCACTTTGGAGTTTTCTGA 666 0.4324 MPLFALILHHFSSYDHNRLNPITAAVDLFRREFNRQIIHKCPVLVYSAVKDHKIGKATFECAVCLNEFQHNDKIRLLPKCYHIFHQDCIDVWLLSHMNCPVCRSKLTPDVPDIAIPIDAATESTEQQQEESNTVRVSEEEVVMADEDIFRLRELRMLDKFPLPRSHSTGHSLAENEEKVENNHDDDVVLHLPPAWSSKRVWYRSNNNVERWSLSMTHFGVF* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2882 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 31 180 - -
Mtr3g2882 221 Pfam Ring finger domain 60 103 IPR001841 -
Mtr3g2882 221 SUPERFAMILY RING/U-box 60 111 - -
Mtr3g2882 221 SMART ring_2 61 102 IPR001841 -
Mtr3g2882 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 109 IPR013083 -
Mtr3g2882 221 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Mtr3g2882 221 PANTHER RING FINGER DOMAIN-CONTAINING 31 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2882 Mtr-Chr3 42744068 42744733 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2882 1 180 Rapid Response to Elicitors AT3G05200 34.031 1.15e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2882 K10664 - csin:114255863 132.109