Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2881 ATGCCCTTATTTGCACTCATCCTCCACCATTTCTCTTCCTACGACCACAATCGCCTTAATCCCATCACCGCTGCCGTCGACCTATTCCGCCGTGAATTCAACCGTCAAATCATCCACAAATGCCCTGTCCTCGTTTACTCCGCCGTGAAAGACCACAAAATAGGTAAAGCCACATTTGAATGTGCTGTTTGCTTGAATGAGTTTCAACACAATGATAAAATAAGGTTGTTGCCAAAATGTTACCATATTTTTCACCAAGATTGTATTGATGTTTGGTTATTATCTCATATGAATTGTCCTGTATGTCGTTCCAAACTCACCCCTGATGTCCCCGACGCTGCAATCCCTATCGATGCCGCGACGGAATCAACGGAGCAACAACAAGAAGAGAGCAACACTGTTGATGAAGAGATTTTCCATTCACGGGAATTGAGAATTTTGGACAAGTATCCTTTCCCGAGGTCACATTCAACGGGACATTTTTTAGCGGAAAATGAGGAGAAAGTAGATAGGTACATATTGTGA 525 0.4305 MPLFALILHHFSSYDHNRLNPITAAVDLFRREFNRQIIHKCPVLVYSAVKDHKIGKATFECAVCLNEFQHNDKIRLLPKCYHIFHQDCIDVWLLSHMNCPVCRSKLTPDVPDAAIPIDAATESTEQQQEESNTVDEEIFHSRELRILDKYPFPRSHSTGHFLAENEEKVDRYIL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2881 174 PANTHER RING FINGER DOMAIN-CONTAINING 31 174 - -
Mtr3g2881 174 SMART ring_2 61 102 IPR001841 -
Mtr3g2881 174 ProSiteProfiles Zinc finger RING-type profile. 61 103 IPR001841 -
Mtr3g2881 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 31 174 - -
Mtr3g2881 174 SUPERFAMILY RING/U-box 60 111 - -
Mtr3g2881 174 Pfam Ring finger domain 60 103 IPR001841 -
Mtr3g2881 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2881 Mtr-Chr3 42737172 42737696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2881 1 174 Rapid Response to Elicitors AT3G05200 34.872 2.41e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2881 K10664 - csin:114255863 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2881 3 42737172 42737696 Mtr3g2881 3 42737172 42737696 ECH