Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2877 ATGGGCCTCTCAAACTTTCCCTATGCAGCAGAAGGTGTTGTACCTGTGATTGTAATGAACACTGTTCTATCTATGGTTCTATTAAAGAACATGTTTAGATCTATGCTTCAAGTAGTTGGTTGCACATCAACAACTAATTCTTCTTATTCTCCAAATATTATGGAAGAATTAGAAGAAGAACAAGTGTACTCCCAAGAGATTAGTAATTCAAGGGAAAGGAGGGTGTCAATAACACAATACAAGTTCTTGTGTTATAACAGGTCCAACATAGCAAGAAGTAGTAGTTCATGTGGATGGACAAGTCCTATGGTAGAGTGTTGTGTTTGTTTGTCTGGTTTTGAAGCAAATCAAGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCACAGAGGTTGCTTAGATAAATGGTTTGATAACAAACATAGTTCATGTCCTTTATGTCGTTCTATGGACTAA 456 0.3728 MGLSNFPYAAEGVVPVIVMNTVLSMVLLKNMFRSMLQVVGCTSTTNSSYSPNIMEELEEEQVYSQEISNSRERRVSITQYKFLCYNRSNIARSSSSCGWTSPMVECCVCLSGFEANQEVSELPCKHFFHRGCLDKWFDNKHSSCPLCRSMD* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2877 151 SMART ringv_2 105 148 IPR011016 GO:0008270
Mtr3g2877 151 PANTHER - 1 150 IPR044249 -
Mtr3g2877 151 SMART ring_2 106 147 IPR001841 -
Mtr3g2877 151 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mtr3g2877 151 PANTHER F21J9.24-RELATED 1 150 - -
Mtr3g2877 151 SUPERFAMILY RING/U-box 105 149 - -
Mtr3g2877 151 CDD mRING-H2-C3H2C2D_ZSWM2 105 148 - -
Mtr3g2877 151 Pfam Ring finger domain 105 148 IPR001841 -
Mtr3g2877 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 151 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2877 1 149 C3H Transcription Factor Family AT2G04240 33.333 9.07e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2877 K16285 - tcc:18609579 180.259