Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2863 ATGGGAGAAACCTTAAACCCTACTGCTCCAGAGTTTAATCCAAACAGCTACATTCCCATTCCAGTCGCCGTCGGTATTCCCTACCCCTATCCACCCTACGCCGTCACACCGCCGCCGCACCTTTCCACAATACCCACCCGCTCTATTCTCCTCAGTCCCGCCCCTCCCACCCCTGAAACTGACCTCCGAAAAGACCTTTCAGCTTTCGGTGAAGTGAGAGCCGTTCAAACGGACTCATTCCGTAACGGAGTCATAACTGCTCATTACTATGATCTTAGACACGCAGAGACGGCGTTTGCCGCTATTCGGACTCATCACGTCCTCTGCGCTGCCTATTTCAACCCTCTATCTTATTCCCAAATTTTCCCCACGCCACTACCTCCGCCGCCACCGGGTCTCGTCGCCGGTGCACCGCTGTGGGCCCATTATGTACTCTCCGATGCTCAGAATCAAGGAACCCTAGTTGTTTTCAACTTAGATGACGACGTTTCTTCTGATCAGCTGCAACAAGTTTTCGGAGCTTTTGGAGCAATTAAGGAAGTGAGGGATACACCATGGAAGAAAAGGAATCAAAGTTTTGTTGAGTTTTTCGACATAAGAGATGCTGAAAAAGCTTTGAAAGAATTGAATGGCAAAGAGATTAATGGAAAACCAATTGCTATTGAGTTTAGTAAACCAAAATTATTTCATTCTGAACCCAATGCTTATATCTCTAATAAGCCTTTTAATTACAACCTTAATCCACCTCCTTCCCCGCGACGTCATTTTGCTTCACAACCTCATTCACCACAATTATCTCACAAGAGTTTGACATTTAACCGGGTAAACCACAATAGGATTGGTTCAATGGGTTCATTGAAGGGTGAAGAGAGGTATCCTTTTGTTAGAGTTCAAAGTAGAGAGAGTTTTGGGGAAAGTGCTTGGAGTTGGAAGGGGAAGTTAGCAAAGAGACATGAAAATCGTTTTCTAATCAAAGAAGATGCCATTGTTGAATCTGATCCTAGAACCACTCTCATGATCAAAAACATACCCAACAAATACAGTCAGAAGTTACTGTTGAATATGCTGGACAACCACTGTGTACACTGCAATGAGCAGCTAGGCGACGGCGAGCCTCTCTCCTCCTATGACTTTGTGTATCTTCCTATAGATTTTAAGAACAAATGCAACGTGGGATATGGATTCGTGAATATGACATCTCCTGAGGCAACGCTAAGATTCTACAAGGCCTTCCAGCACCAACATTGGGAGGTCTTCAATTCTAGAAAAATTTGCCAACTCACATACGCAAGAGTTCAGGGTTTGGAATCGTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCTCGAGATGGAAAACAATTGACGGAGCCAATTCCAGTGGCGGGGAACATGCTACAAATTGGTGCTGCTCCTTCTGTAGCTGATGAGATGGAAGGTCAAGATCATAGAGTAGGTAGTGGTGGCTGTGACGTGATCAGCAGAAAAAGTGGCGGCATAGGTGATGATGATGATGATAAAACAGATGTGAAGTGA 1575 0.4508 MGETLNPTAPEFNPNSYIPIPVAVGIPYPYPPYAVTPPPHLSTIPTRSILLSPAPPTPETDLRKDLSAFGEVRAVQTDSFRNGVITAHYYDLRHAETAFAAIRTHHVLCAAYFNPLSYSQIFPTPLPPPPPGLVAGAPLWAHYVLSDAQNQGTLVVFNLDDDVSSDQLQQVFGAFGAIKEVRDTPWKKRNQSFVEFFDIRDAEKALKELNGKEINGKPIAIEFSKPKLFHSEPNAYISNKPFNYNLNPPPSPRRHFASQPHSPQLSHKSLTFNRVNHNRIGSMGSLKGEERYPFVRVQSRESFGESAWSWKGKLAKRHENRFLIKEDAIVESDPRTTLMIKNIPNKYSQKLLLNMLDNHCVHCNEQLGDGEPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRFYKAFQHQHWEVFNSRKICQLTYARVQGLESLKEHFKNSKFPCEMEHYLPVVFSPPRDGKQLTEPIPVAGNMLQIGAAPSVADEMEGQDHRVGSGGCDVISRKSGGIGDDDDDKTDVK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2863 524 CDD RRM1_EAR1_like 46 120 - -
Mtr3g2863 524 CDD RRM3_EAR1_like 335 434 IPR034458 -
Mtr3g2863 524 Pfam RNA recognition motif 2 335 443 IPR007201 -
Mtr3g2863 524 Gene3D - 145 236 IPR012677 -
Mtr3g2863 524 MobiDBLite consensus disorder prediction 510 524 - -
Mtr3g2863 524 PANTHER RNA BINDING PROTEIN 24 497 - -
Mtr3g2863 524 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 219 IPR000504 GO:0003723
Mtr3g2863 524 SUPERFAMILY RNA-binding domain, RBD 153 415 IPR035979 GO:0003676
Mtr3g2863 524 SMART rrm1_1 153 222 IPR000504 GO:0003723
Mtr3g2863 524 SMART rrm1_1 337 419 IPR000504 GO:0003723
Mtr3g2863 524 Coils Coil 523 524 - -
Mtr3g2863 524 MobiDBLite consensus disorder prediction 488 524 - -
Mtr3g2863 524 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 226 IPR000504 GO:0003723
Mtr3g2863 524 Gene3D - 325 442 IPR012677 -
Mtr3g2863 524 PANTHER TERMINAL EAR1-LIKE 1 24 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2863 Mtr-Chr3 42583837 42586750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2863 154 227 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 5.93e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2863 - - aprc:113851312 598.586