Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2858 ATGGCATTTGCTACCATACTAGTGTTCCATTTCTTGCTTCTTGCTCCAGTTTTGATTTATTCTTCTCATCATGTTGAAGATCCTGAATCAGTGGTCCAACAAGTGCAGAAGAGCATCATTGAGAATCAGAACAGAAGAAAACTGGGTTATTATGATGCTTGTGGTACAAACAATCCAATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAACAACCGCAAGAGACTAGCAGAATGTGCTATTGGGTTCGGTAGACGTGCAATTGGAGGTAAAGATGGAAAATATTACATGGTCATTGACTCAAGTGATGACCCTGTGAATCCTAAGCCAGGAACATTAAGACATGCTGTTATCCAACAAGAGCCTTTATGGATCATTTTCAAGCATGACATGGTGATCAAACTAAAGATGGATCTTCTCATGAATTCTTTCAAAACAATTGATGGTAGAGGTGTAAATGTACACATTGCTGAAGGACCATGTATTAGAATACAAGAAAAGACCAACATCATAATTCATGGTATACACATTCATCATTGTGTACGAGGTGGTAGTGGTTATGTGAGTGACTCTCCTAACCATCGTGTTAGGAAAGAAAGATCGGATGGTGATGGGATTACAATATATGGTGCGGCTCATATTTGGGTGGATCATTGTTCCTTGTCAAATTGTTTTGACGGTTTGATTGATGTTGTTCATGGATCAACGGCTGTTACTATTTCTAATAATTATATGACACGTCATAACAAAGTTATGCTCTTTGGTCATAGTGATTCCTATGAAGGGGACAAAAATATGCAAGCTACTATAGCTTTTAACCATTTTGGAGAAGGGCTTGGGGGAAGAATGCCAAGGTGCAGGTTCGGATACTTTCATGTGGTCAACAATGATTATACACATTGGCAACAATATGCAATTGGTGGAAGTTCGTCCCCAACTATTTTTAGTCAAGGCAATAGATTTCTAGCTCCAGATGATGATGACCACAAAGAGATCACGAAGCATTTTTACTCATCAAAGGGTGAGTGGGAGAACTGGAATTGGAGATCTGAAGGAGATCTAATGTTGAATGGTGCCTACTTCACACCGTCTGGAGCGGGAGCATCTTCTTCGACATATGCCAAAGCCTCAAGCATGTCAGCACGACCACCTATGCTTGTGGCTTCAATGACAGCAGGAGCTGGAGTGCTTAGATGCAAAAAGGGTTACCAATGCTACTACTAG 1227 0.4051 MAFATILVFHFLLLAPVLIYSSHHVEDPESVVQQVQKSIIENQNRRKLGYYDACGTNNPIDDCWRCDPNWENNRKRLAECAIGFGRRAIGGKDGKYYMVIDSSDDPVNPKPGTLRHAVIQQEPLWIIFKHDMVIKLKMDLLMNSFKTIDGRGVNVHIAEGPCIRIQEKTNIIIHGIHIHHCVRGGSGYVSDSPNHRVRKERSDGDGITIYGAAHIWVDHCSLSNCFDGLIDVVHGSTAVTISNNYMTRHNKVMLFGHSDSYEGDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFYSSKGEWENWNWRSEGDLMLNGAYFTPSGAGASSSTYAKASSMSARPPMLVASMTAGAGVLRCKKGYQCYY* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2858 408 Pfam Pectate lyase 142 322 IPR002022 -
Mtr3g2858 408 Gene3D - 57 399 IPR012334 -
Mtr3g2858 408 SMART amb_all 131 328 IPR002022 -
Mtr3g2858 408 PANTHER PECTATE LYASE 18-RELATED 3 403 IPR045032 GO:0030570
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Mtr3g2858 408 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mtr3g2858 408 PANTHER PECTATE LYASE 3 403 - -
Mtr3g2858 408 SUPERFAMILY Pectin lyase-like 33 400 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2858 Mtr-Chr3 42528586 42530945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2858 1 406 Polysaccharide Lyase AT5G63180 65.931 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2858 K01728 - gmx:100801136 665.225