Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2857 ATGGCAGTTCCACTCACATACATGCTACTACTCTCATTACTACTTTTTGTACCTTCCTTCATTCAATCTTCCCCACTTCAAGATCCTGAATTAGTAGTCCAAGATGTACAAAAGAGTATTAATGATTCAAGGAGAAACTTAGCATTCCTTTCTTGTGGAAGTGGCAACCCTATTGATGATTGTTGGAGATGTGACAAAAATTGGGAAAAGAATCGTCAACGTTTAGCAGATTGTGCCATTGGATTTGGCAAACATGCAATTGGAGGAAGAGATGGTAAAATATATGTAGTAACTGATCCTGGTGATCATGCTGTGAATCCAAAGCCAGGAACATTAAGATATGGTGTTATTCAAGAAGAACCATTGTGGATAATCTTCAAGCGTGACATGGTTATTAAGCTTAAACAAGAGCTAATGATGAATTCTTTCAAAACAATTGATGGTAGAGGAACAAATGTGCACATTGCTGGTGGACCTTGTATTACTGTACAATTTGTGACAAATATTATTATTCATGGGATTAATATACATGATTGTAAAAGAGGTGGGAATACTTATGTGAGAGATACACCTACACATTATGGTTTTAGGACACTTTCTGATGGTGATGGAGTGTCTATTTTTGGTGGGAGTCATGTTTGGGTTGATCATTGCTCTCTTTCTAATTGCCGTGATGGATTAATTGATGTTATTCATGGATCTACAGCTATTACTATTTCTAATAATTTCATGACTCATCATAATAAGGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGACTAGTTCAAAGAATGCCAAGATGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACACATTGGAGAATGTATGCCATAGGAGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAATAGATTTCTTGCTTCCAATGACAATACCTTCAAAGAGGTGACAAAGCGCGAGAATGCAGGACAAAGTCAATGGAAGAATTGGAATTGGAGATCCAGTGGTGATTTGATGTTAAACGGTGCATTCTTTAGGCCATCAGGAGCAGGTTCATCTTCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAACCATCTTCTCTAGTAGCATCTCTCACTGCATCAGCAGGATCACTAAACTGCAGAAAAGGATCTCGCTGCTGA 1212 0.3804 MAVPLTYMLLLSLLLFVPSFIQSSPLQDPELVVQDVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPGDHAVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITVQFVTNIIIHGINIHDCKRGGNTYVRDTPTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSANPTINSQGNRFLASNDNTFKEVTKRENAGQSQWKNWNWRSSGDLMLNGAFFRPSGAGSSSSYARASSLAAKPSSLVASLTASAGSLNCRKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2857 403 PANTHER PECTATE LYASE 18-RELATED 8 400 IPR045032 GO:0030570
Mtr3g2857 403 SMART amb_all 129 326 IPR002022 -
Mtr3g2857 403 Gene3D - 55 396 IPR012334 -
Mtr3g2857 403 PANTHER PECTATE LYASE 8 400 - -
Mtr3g2857 403 SUPERFAMILY Pectin lyase-like 56 394 IPR011050 -
Mtr3g2857 403 Pfam Pectate lyase 135 320 IPR002022 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Mtr3g2857 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2857 Mtr-Chr3 42522472 42524277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2857 5 403 Polysaccharide Lyase AT5G63180 74.752 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2857 K01728 - gmx:100816256 744.191