Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2843 ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGTGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTTAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTCCGTGAAAGGAAAGATGGATACGATATAGTGATCAGCGATGTTAACATGCCTGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCCGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTCCAACACGGTGCATGTGATTATCTCCTTAAGCCCATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCCGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAGCAGACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACCTGAGTAGACTCCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTTGGTTTTCCGAACTCAGCAAACAAGCAACAAAACGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGTTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTCCACATTCCACCGCTGCAGAAAAAGCAAGAGCTTTGACTGGTAACATCACCGATGCAACAGACACTGCACTTAATAAACCTTTTGCCCCACTCGAATCAGAACGAAAACGTGGAGCGTTTGATTGTAACATGTCAACACCGTATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCAGTTGTTCATCTAGAGGATAAATTCAACCTATTGCCCTTAAATGGTAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCACTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTGTAGAAACAAAACCTACGTTTTCTGATTACAAGAAAGACTACACCAGTTCGGTGAGTTCAATAAGAAGTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTATGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCGGTTTAAAAACACAGACATCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCTGCGCCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAACCACTTATATGATTCAGCAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1713 0.3929 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGNFGFPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVPHSTAAEKARALTGNITDATDTALNKPFAPLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSVVHLEDKFNLLPLNGKQHNIQVDQSQSIASISSTPSITEQDVAACVETKPTFSDYKKDYTSSVSSIRSSVDTFPFQPGSLMMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSADYSVIDQGLFIA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2843 570 CDD REC_typeB_ARR-like 19 133 - -
Mtr3g2843 570 SUPERFAMILY CheY-like 16 145 IPR011006 -
Mtr3g2843 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 544 - -
Mtr3g2843 570 SMART REC_2 17 129 IPR001789 GO:0000160
Mtr3g2843 570 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Mtr3g2843 570 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Mtr3g2843 570 MobiDBLite consensus disorder prediction 260 294 - -
Mtr3g2843 570 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Mtr3g2843 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 544 IPR045279 GO:0009736
Mtr3g2843 570 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Mtr3g2843 570 Gene3D - 200 258 - -
Mtr3g2843 570 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Mtr3g2843 570 Gene3D - 17 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2843 Mtr-Chr3 42398155 42402740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2843 13 265 Response Regulator Gene Family AT2G25180 56.641 2.26e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr3g2843 Response_reg 2.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2843 - K14491 gmx:100797421 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2843 3 42398155 42402740 Mtr3g2843 3 42398155 42402740 ECH
Mtr3g2843 3 42398155 42402740 Mtr8g2768 8 38356991 38360680 PCT