Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2817 ATGATGGATGTTTCTGAGGTTGAAGAAAGTTTCTTTGCCGCAAGCGATGCCAAGTTACATGCAGAAATGTGCAGAAGTCTTTCTGCAATATATTGTAAAGTATTGTCATTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCACTGCATGTAGCATTAGAGAAGGCGAAGAATGTACTTAAGCATTGCTCAGAGTGTAGTAAACTTTACTTGGCAATAACTGGGGACTCTGTTCTTCTCAAATTTGAGAAGGCCAAGTGTGCTCTTGTAGATAGTCTTAAGCTGGTGGAAGATATTGTTTCCCAATCCATTGGGTATCAGATTGATGAAATTGTGAACGAAATTGCTGGCATGGTGTTTGCGCTTGATCCATCGGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGATAGAAAGTTTAACAACTCTAATGATAGTAGTGAACTTGAGTGTTTTCATATGGCTGCTACTAGACTTGGAATCACATCTTCCAGAGCAGCTCTCACCGAAAGAAGAGCTTTAAAAAAGCTCATTGAAAGGGCTCGAGCCGAAGAAGACAAGAGGAAGGAATCAATTATTGCATATCTATTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGACGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCGACCGTTCAATCTTGCTCTCCCAACGTCGTTCCTGGTGGTCATTGTCAAGTCTTTGATAGACAGATATCAAAACTTGGTTCCTTTAATTTTAAACCTAACAATAAGAAATCAGGTCAAATGCCCCTTCCACCAGAAGAGTTAAGGTGTCCAATCTCACTGCAACTTATGAGCGATCCTGTTATAATTGCTTCTGGGCAGACATATGAAAGAGCTTGTATAGAAAAATGGTTCAATGATGGCCACAACACCTGCCCAAAAACTCAACAGAAACTTGCACATCTTTCTTTGACTCCTAATTACTGTGTCAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATAGAATCCCTATTCCCGAAGGCCCTCCCGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCAGATTCCGAATCCATTAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTTGTTCCACTTGAAGAGAACAGTATCTTAGAGAAAACTGAGGGAAATGTAACTGAAAGTTTCTCTGCACAGGAAGAGGAAGACAGTGAGAAGTATCTTAGTTTACTGAAAGTATTGACCGAAGGGAACAATTGGAAAAGGAAGTGTAAAGTGGTAGAGCAGTTAAGACTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTTTTCAGTTTCTTCAATCAGCTGTGCATGAAGGGAATGCGATGGCTCTGGAAAATGGAGCTATGGCTTTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAACTTATGATATCAGCGGGAATCTTATCGTTGTTGGAGGAAATGATTTCATGCACCAGTTCGTACAGTTGTGCAACCGCCCTGTATCTTAATCTTTCTTGCCTTGAAGAAGCCAAGCATATGATTGGCGTGAGTCAGGCCGTGCAGTTCCTAATACAGATGCTTGGAACTAAGATAGAAGTCCAGTGCAAGCTAGATGCCCTCCATGCACTGTATAATATTTCTACCGTACCCTCAAATATTTCGAACCTCCTTTCATCTGGCATCATCAATGGCCTACAATCCCTTCTTGTAGGCCAGGCCGAGTGCTCATGGACTGAAAAATGCATAGCTGTTTTGGTTAATTTGGCAGTTTCTCACGAAGGAAGAGAGGAAATGATGTTGAATCCTGAACTGATAAGCACATTGGCTTCTATACTCGATACTGGTGAATCCATAGAGCAGGAACAGGCTGTGTCTTGCCTCCTAATATTATGCAACAGAAGTGAGAAATGTTGTGAGATGGTCCTGCAAGAAGGCGCTATACCTGCATTGGTGTCGATAACGGTAAATGGTACCTCAAGAGGAAGAGAGAAAGCCCAGAAACTCTTGATGCTCTTTCGAGAGCAGCGACAGCGAGACCATTCACCTGCTAATACTCAAGACTGTTCACCTGAAGCTGGTGATTTGTCCATGCCTCCTCGAGAAACAAAACCTCTAAGTAAATCAATATCTAGAAGAAAAGTGGGGAAAGCTCTTAGTTTTCTATGGAAAAGCAAAAGCTATTCCGTTTACCAGTGTTAG 2301 0.4155 MMDVSEVEESFFAASDAKLHAEMCRSLSAIYCKVLSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLKHCSECSKLYLAITGDSVLLKFEKAKCALVDSLKLVEDIVSQSIGYQIDEIVNEIAGMVFALDPSEKQVGDDLIALLQQDRKFNNSNDSSELECFHMAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQSCSPNVVPGGHCQVFDRQISKLGSFNFKPNNKKSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFNDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNRIPIPEGPPESLDFNYWRLALSDSESINSRSVNSVNSCKLKGVKVVPLEENSILEKTEGNVTESFSAQEEEDSEKYLSLLKVLTEGNNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVEALFQFLQSAVHEGNAMALENGAMALFNLAVNNNRNKELMISAGILSLLEEMISCTSSYSCATALYLNLSCLEEAKHMIGVSQAVQFLIQMLGTKIEVQCKLDALHALYNISTVPSNISNLLSSGIINGLQSLLVGQAECSWTEKCIAVLVNLAVSHEGREEMMLNPELISTLASILDTGESIEQEQAVSCLLILCNRSEKCCEMVLQEGAIPALVSITVNGTSRGREKAQKLLMLFREQRQRDHSPANTQDCSPEAGDLSMPPRETKPLSKSISRRKVGKALSFLWKSKSYSVYQC* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2817 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mtr3g2817 766 SMART arm_5 625 666 IPR000225 GO:0005515
Mtr3g2817 766 SMART arm_5 541 582 IPR000225 GO:0005515
Mtr3g2817 766 SMART arm_5 456 500 IPR000225 GO:0005515
Mtr3g2817 766 SMART arm_5 502 540 IPR000225 GO:0005515
Mtr3g2817 766 Gene3D - 610 713 IPR011989 -
Mtr3g2817 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 352 IPR013083 -
Mtr3g2817 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mtr3g2817 766 PANTHER U BOX DOMAIN-CONTAINING 2 758 - -
Mtr3g2817 766 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Mtr3g2817 766 MobiDBLite consensus disorder prediction 710 742 - -
Mtr3g2817 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 758 - -
Mtr3g2817 766 SUPERFAMILY RING/U-box 277 355 - -
Mtr3g2817 766 SUPERFAMILY ARM repeat 428 708 IPR016024 -
Mtr3g2817 766 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mtr3g2817 766 Coils Coil 176 196 - -
Mtr3g2817 766 Gene3D - 422 609 IPR011989 -
Mtr3g2817 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2817 Mtr-Chr3 42153339 42158196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2817 2 765 U-box Gene Family AT1G24330 66.239 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2817 - - gmx:100804344 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2817 3 42153339 42158196 Mtr3g2817 3 42153339 42158196 ECH
Mtr3g2817 3 42153339 42158196 Mtr8g2788 8 38550068 38555017 PCT