Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2791 ATGGAGTGGAACGTGAAATCTCCCGGGCAATGGGACTGGGAAAACTTATTCTTCTTGAATTCAAAAGCAGCAGAAACTCACAGGTTACAATCTACTGATTGGAGTATGGAGGAAGATCGAGAAATCAATGTTGGGATGTTGATTCCATCTGGTGGTAGCGGCTATTCAGTGTCTAAACTAATGCATGCTTCATCCTCGAGGAGCTCAAAATCTGCTTCCAATAATTCATCATCAAATGAGGACAGCAAGACATCGATGTTAACTCAAGAAGGTTCTCCAGACAATTCCACCGGTAAGAAAGAATCGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCAGAACCATTGCTCACACTAAAGCTTGGTAAAAGATTATACTTTGAGGATGTTAGCACTGGAAGTCATTCCAAGAAAGCCTCTTCCTCTGCAGTTCCTCTTTTGTGCGGAAAGAAAGGTAAATCGAGCAGTCAGAACATGCTAAATCCAAGCTGCCAGGTGGAAGGTTGTGGCCTCGACCTCTCTTTTGCTAAAGATTACCATCGGAAACATAGAATTTGTGACAGTCATTCCAAATCGCCTGTGGTGGTAGTAGCTGGTTTGGAGCGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTCTCAGAGTTTGATGATAAAAAAAGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTGAAATTGAATCCATCAGCTCTCTCTTCGTCTCCCTATGATGGGAGGCAAGCAATGGGCCCATTTGCTTTTCCAAAGAATACTTCAAATTTAGCATGGCCAGACATGCCCAACAGCAAGCTCCCCCAAACCAAAGATTTTATGCTCAAAACTCCAAAAAACTTCAACAAGATTGTCACTATGCTTTCTGATGATTCAAGTGGCCACTTTATATCCAAAGGCAAAGGAACCAATATTGCTGTCCCAGGTCTAGAAGATCCAAATACCTTGTCTGATCCAAGTGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATATGATACCAAGCCCCCCTCCTTCGTACACTCCAATCGGACAACCGGCACCCCTCAGTATGCAACTGCTCAGCGCTCACCTTTTTCGTCACCGGAATATTGGCACACTGATCAACATCAGGCCAGCTCCAGTGCCTGTATCTCGTTCTCGGGTTACGACAATAGCAATCGCTATCAAGACTTTCAGCTGTTCAGCGAACCCTATGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA 1305 0.449 MEWNVKSPGQWDWENLFFLNSKAAETHRLQSTDWSMEEDREINVGMLIPSGGSGYSVSKLMHASSSRSSKSASNNSSSNEDSKTSMLTQEGSPDNSTGKKESSKGDPIETSPAAEPLLTLKLGKRLYFEDVSTGSHSKKASSSAVPLLCGKKGKSSSQNMLNPSCQVEGCGLDLSFAKDYHRKHRICDSHSKSPVVVVAGLERRFCQQCSRFHDLSEFDDKKRSCRRRLSDHNARRRKPQPEAVKLNPSALSSSPYDGRQAMGPFAFPKNTSNLAWPDMPNSKLPQTKDFMLKTPKNFNKIVTMLSDDSSGHFISKGKGTNIAVPGLEDPNTLSDPSATQDVNRALSLLSTNSWGAYDTKPPSFVHSNRTTGTPQYATAQRSPFSSPEYWHTDQHQASSSACISFSGYDNSNRYQDFQLFSEPYESSFPCNQLD* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2791 434 MobiDBLite consensus disorder prediction 229 255 - -
Mtr3g2791 434 Pfam SBP domain 165 238 IPR004333 GO:0003677
Mtr3g2791 434 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
Mtr3g2791 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 433 - -
Mtr3g2791 434 MobiDBLite consensus disorder prediction 58 96 - -
Mtr3g2791 434 MobiDBLite consensus disorder prediction 368 391 - -
Mtr3g2791 434 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 433 IPR044817 GO:0003677
Mtr3g2791 434 MobiDBLite consensus disorder prediction 58 115 - -
Mtr3g2791 434 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Mtr3g2791 434 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2791 Mtr-Chr3 41940049 41944516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2791 1 365 SBP-box Gene Family AT5G43270 39.241 1.44e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr3g2791 SBP 2.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2791 - - gmx:100796013 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2791 3 41940049 41944516 Mtr3g2791 3 41940049 41944516 ECH