Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2789 ATGAGTTTGTTACATGTAATTGGGTTTAGTCTAAAAGTGGGGCATCTACTTTTAGTGCTATGTTGCTGGATTGTATCTTTAATTTATATCAACTGGTTCATTAGTATGGACACAAAGATGGGATTTTTAGGAGATGGTGGAAAGATGTGGCTTAAATGGTGGGAGAAGATCTTGGGAAGTACATGTAAAATCCATCAACAGTATTATCAGTGTATTGGTTCTAAAAGAGTTAGGAGAGAATTGTGGAGGAAATTGTTGCTGGCATGGGTTTTGGGTTGGTTTATAGCGTCTTTATGGATCTTTTGTGGTATTAACTTACACAACACTGAAAAGAGGAAAGAGACTTTAGCTAGCATGTGTGATGAAAGAGCTAGGATGTTACAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCCATGTCTATTCTGATCTCAACTTTCCATCATGCTAAGAATCCTTCTGCCATTGACCAGAAAACTTTTGCAAAGTATACAGAAAGAACTGCTTTTGAGAGGCCACTTACAAGTGGTGTTGCATATGCTGTAAGGGTGCTTCAATCTGAAAGGGAACAATTTGAGAAGCAACAAGGGTGGAGTATTAAGAGGATGGATACCATGGAGCAGAACCCGGTTCATGAGGATGATTATGTACCAGATGAATTGGAACCATCCCCTATCCATGAAGAATATGCTCCTGTCATCTTTGCACAAGATACAATTTCACATGTCATATCTATTGATGTGCTTTCCGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGGGAATCAGGCAAAGGGGTTTTAACTGCCCCTTTCAGACTGTTGAAAACAAACCGTTTGGGGGTTATCCTCACATTTGCTGTTTACAAGAGAGATCTTCCATCAAATGCTACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGTGGGGTGTTTGAAATAGAGTCATTAGTGGAGAAATTGCTTCAACAACTTGCTAGCAAGCAAACCGTGCTTGTTAATGTGTATGATACAACAAATCAGACACACTCAATTCCCATGTATGGTTCTGATGTATCAGGTGACGAGTTCTATCATGTGAGCTTTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATTTCCAAGGTTGGCGACGGGTACATCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTTCATGCAACTGTGAGTCGAATTGCCAAAGTAGAGGATGATTACCAAGAGATGATGGTGCTTAAAAAACGAGCTGAAGCAGCTGATGTTGCTAAATCCCAGTTCCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAACGGTGTTTTAGGGATGATGAATATGCTCATGGACACTGATCTAGATGTAACCCAACAAGAATATGTCAGAACCGCACAAGGCAGTGGAAAAGCTCTGGTGTCAATTATAAATGAAGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGATAGAGCTCGAGGCTGTGCTGTTCGATATACGATCAATTATGGACGATGTGTTATCGCTATTTTCTGAGAAATCTCAAGGAAAAGGAGTAGAGTTAGCAGTTTATGTCTCGGATCAGGTTCCTCAACAGCTTATAGGTGATCCTGGAAGGTTTCGACAAATAATTACAAATCTCATGGGTAACTCGATTAAGTTCACAGACAAAGGACATATATTTGTGACTATCCATCTTGTTGAGGAGGTTTTCCATTCAATAGAAGTTGAGAGAGAATCCACTTCTAAAGATGCAGAACATACATTAAGTGGTTTCCCAGTTGCTGATGGTCGCCGCAGCTGGGAAGGATTCAGAGCCTTCAGTCACGAGGGACCTCTTGGTTCTTTCTCGTCCACCTCCTCCAACGATCTCATCAGTTTGATTGTATCGGTAGAGGATACAGGCGATGGTATTCCTCTAGAGTCACAGCCGATGATATTCACTCCATTCATGCAGGTAGGTCCATCCATCTCGAGAAAACACGGAGGAACTGGTATTGGTCTAAGCATTAGCAAGTGTTTAGTTGGCCTCATGAATGGAGAAATCGGATTTGTGAGCGAACCAAAGATTGGAAGCACTTTCACATTTACAGCTGTGTTCACCAATGCATGTCCTAATTCAAATGAGCTTAAAACTCAACAAATCAATAACCAACCTCATCCTGCAACTTCAGAGTTTAATGGTATGGCGGCACTAGTTATTGATCCAAGACCCGTTCGTGCTGAAGTGTCGAGATATCACATACAAAGGCTTGGCGTTCGTGTTGAAATAGTTTCAGATTTGAAGCAAGGTTTGTCCACCGTAACCGATGGGGATGCATCTGTCAATATGATCCTGATTGAACAGGAGGTTTGGGATAGAGACTCGAGTATTTCATCGCACTTTGTGAATAACATTAGGAAAGTTGTTGAAATTGATAAAGGAAAAGGGATTCCTCCAAAACTATTCATTCTTGTTAATTCTAGTAGTTCTTTTAGAGCGGGTTCTACGGCATCATGTCTTCATAATCCAACAGTTGTCACAAAACCTTTGAGAGCAAGTATGCTTGCGGCTTCACTACAAAGAGCAATGGGTGTTGGGAACAAAGGGAATCCTCGAAACGGAGAACATCAGGGTTTGTCTCTCAAGCATCTTCTCTCTGGGAGAAAGATTCTTATTGTAGATGATAATAGTGTGAATCGCACGGTAGCGGCTGGTGCTTTGAAAAAATATGGAGCTGGTGTGGTTTGTGTAAGCAGTGGAATAGAAGCCATCACTATGCTGAGGCCACCCCATCAATTTGATGCATGTTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAAGCTACACGTCGAATTCGAGAGATCGAAAACAGTGTGAAAGACAGAGAACTGTTTGTTCATCTACCCATTTTGGCTATGACCGCAGATGTGATGCAGGCTACACACCAGGAATGCTCTAAGTGTGGGATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAACTTTATAGAGAGGTTTCAAAGTTTTTCCAATCATCTTGA 3084 0.4121 MSLLHVIGFSLKVGHLLLVLCCWIVSLIYINWFISMDTKMGFLGDGGKMWLKWWEKILGSTCKIHQQYYQCIGSKRVRRELWRKLLLAWVLGWFIASLWIFCGINLHNTEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFAKYTERTAFERPLTSGVAYAVRVLQSEREQFEKQQGWSIKRMDTMEQNPVHEDDYVPDELEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNQTHSIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHCRFKQKPPFPRLATGTSIGILVIALLVGHIFHATVSRIAKVEDDYQEMMVLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKIELEAVLFDIRSIMDDVLSLFSEKSQGKGVELAVYVSDQVPQQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDAEHTLSGFPVADGRRSWEGFRAFSHEGPLGSFSSTSSNDLISLIVSVEDTGDGIPLESQPMIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNELKTQQINNQPHPATSEFNGMAALVIDPRPVRAEVSRYHIQRLGVRVEIVSDLKQGLSTVTDGDASVNMILIEQEVWDRDSSISSHFVNNIRKVVEIDKGKGIPPKLFILVNSSSSFRAGSTASCLHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQGLSLKHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLRPPHQFDACFMDIQMPEMDGFEATRRIREIENSVKDRELFVHLPILAMTADVMQATHQECSKCGMDGYVSKPFEAEQLYREVSKFFQSS* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2789 1027 SUPERFAMILY CheY-like 742 875 IPR011006 -
Mtr3g2789 1027 SMART HKATPase_4 552 719 IPR003594 -
Mtr3g2789 1027 Pfam His Kinase A (phospho-acceptor) domain 440 505 IPR003661 GO:0000155|GO:0007165
Mtr3g2789 1027 Gene3D CHASE domain 157 386 IPR042240 -
Mtr3g2789 1027 Pfam CHASE domain 156 352 IPR006189 -
Mtr3g2789 1027 ProSiteProfiles Histidine kinase domain profile. 447 719 IPR005467 -
Mtr3g2789 1027 PANTHER HISTIDINE KINASE 3 52 1026 - -
Mtr3g2789 1027 SUPERFAMILY CheY-like 896 1023 IPR011006 -
Mtr3g2789 1027 ProSiteProfiles Response regulatory domain profile. 900 1024 IPR001789 GO:0000160
Mtr3g2789 1027 Coils Coil 417 437 - -
Mtr3g2789 1027 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 494 714 IPR036890 -
Mtr3g2789 1027 Gene3D - 504 720 IPR036890 -
Mtr3g2789 1027 SMART CHASE_2 153 354 IPR006189 -
Mtr3g2789 1027 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Mtr3g2789 1027 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Mtr3g2789 1027 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Mtr3g2789 1027 PRINTS Bacterial sensor protein C-terminal signature 703 716 IPR004358 GO:0016310|GO:0016772
Mtr3g2789 1027 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 552 717 IPR003594 -
Mtr3g2789 1027 Gene3D - 408 503 - -
Mtr3g2789 1027 Gene3D - 883 1025 - -
Mtr3g2789 1027 CDD HisKA 440 501 IPR003661 GO:0000155|GO:0007165
Mtr3g2789 1027 CDD REC_hyHK_CKI1_RcsC-like 901 1020 - -
Mtr3g2789 1027 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 426 506 IPR036097 GO:0000155|GO:0007165
Mtr3g2789 1027 Gene3D - 104 156 - -
Mtr3g2789 1027 PANTHER TWO-COMPONENT HISTIDINE KINASE 52 1026 - -
Mtr3g2789 1027 Pfam Response regulator receiver domain 901 1019 IPR001789 GO:0000160
Mtr3g2789 1027 SMART HisKA_10 440 505 IPR003661 GO:0000155|GO:0007165
Mtr3g2789 1027 SMART REC_2 899 1020 IPR001789 GO:0000160
Mtr3g2789 1027 CDD HATPase_EvgS-ArcB-TorS-like 557 717 - -
Mtr3g2789 1027 ProSiteProfiles CHASE domain profile. 153 379 IPR006189 -
Mtr3g2789 1027 CDD PRTases_typeI 853 928 IPR000836 -
Mtr3g2789 1027 ProSiteProfiles Response regulatory domain profile. 747 874 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2789 Mtr-Chr3 41905444 41911897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2789 1 1026 Miscellaneous Gene Families AT1G27320 65.814 0.0 1356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g2789 CHASE 8.5e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2789 K14489 - gmx:100776798 1651.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2789 3 41905444 41911897 Mtr3g2789 3 41905444 41911897 ECH