Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2782 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAAAAAGCTTATGAACTTTCTGTTCTTTGTGATGCAGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGCATGCTCAAAACGCTTGAGAGGTATCAGAAATGCAACTATGGAGCACCTGAGGCTAATGCTCACTCAAAGGAAGCTTTGGTATTGGAATTAAGCAGCCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAATCTCTACAACGCACTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCTTCATTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTAGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCAAACAGAGCTCTTAGACAAAGGATGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGACGCCATCATCCAGGTCAAAACCAGGGTGATCATGATGTATTTCAACCTATTGAGTGTGAACCAACGTTACAAATTGGATATCAGGCTGATCCAGGATCAGTGGTGGTGACAGCAGGGCCAAGCATGAATAACTACATGGGTGGATGGTTACCATGA 741 0.4265 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANAHSKEALVLELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHPGQNQGDHDVFQPIECEPTLQIGYQADPGSVVVTAGPSMNNYMGGWLP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2782 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Mtr3g2782 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mtr3g2782 246 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mtr3g2782 246 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g2782 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr3g2782 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g2782 246 Coils Coil 128 148 - -
Mtr3g2782 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Mtr3g2782 246 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g2782 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2782 Mtr-Chr3 41843857 41847985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2782 1 246 MADS-box Gene Family AT1G24260 72.874 3.59e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr3g2782 K-box 2.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2782 - - gmx:547686 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2782 3 41843857 41847985 Mtr3g2782 3 41843857 41847985 ECH
Mtr8g2817 8 38865796 38872325 Mtr3g2782 3 41843857 41847985 PCT