Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2771 ATGAGAGGAAGCGTGGATGGGTACTTAGGCTCTAAGGATATAACTTGTATTTGTTTAGGTTCTAGTGATGAGACATACATACTTAGTTTTTCACTTTTCAGTTTTGGATCTCAACTTAGAGTAAAGAAAAGAGGTCAATTTATTTTTTCATTATTTATGCTTTCAATCCTCAAGTTCCGTGGAATCTTCTACACAATAAAAGCCACTTCCTTCAGACACTGTCATTCTTGGGGCCACAACAGGATTTTTATTTCCGATAAAAATCCGAATGAGAAGCTATGTAGAGTAGGGCTGTTCTGGGATTTAGACAACAAACCACCCAATTCTATCCCACCTTATGAAGTTGCCAATAAGCTCAGAATAGCTGCAGCTTCTTTTGGAGTTGTTCGACATATGGTGGCGTATGCAAATAGCCACACTTTTAGCAATGTTCCCCACATTGTTCGTGAGAGGAGGAAAGAACGGGAACTGTTGTATCGTTTGGAGGATAAGGGTGTGATTAAGCGTAATGAGCCTCATGTTTGTCGTGTTTGTGGTAGGAAATTTTACACGAATGAAAAGCTTGTTAACCATTTCAAGCAATTGCATGAGCGTGAGCATGCGAAAAGGTTGAATCGGATAGAGTCGGCTAGAGGGAGTAGGAAGGTGAAATTGGTGGGTCAGTATGCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTGTTTTGACTCCTAAAGTTGGGTATGGTTTGGCTGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTAGATAGGCCGCAAGCTGCGGATATTGCATTGCAAAAGCATATGGTGGATATGATGGATCATAGGCGGGTTGAGTGTTTGGTTCTTGTATCGGATGATTCTGATTTTGTCGATGTTATAAAGGAAGCAAAGCTACGGTGTCTCAAGACTGTTGTTATTGGGGATTTTAGTAGTGATGGAGTCTTGAAAAGGACTGCCGATACTGCTTTTTCTTGGGAGGAAATTTTGATGGGGAAGGCGAAGAAGGAGGCTGTATCGGTTGTGGAAAACTGGAAAGATCGTGATATATTGAAAAGGTTGGAGTGGACATATAACCCAGAAGTGGATAAAAAGAAACTCAACTTGGATGATGTAGTTCCTGAAACATCTGGAGATGATGATATTGATGATGACTACAAGGATGACAGAGGTCCTTGGTGGAAATTAGACTCCGATGATAATGGTGTTGCAAATCGATAA 1236 0.4094 MRGSVDGYLGSKDITCICLGSSDETYILSFSLFSFGSQLRVKKRGQFIFSLFMLSILKFRGIFYTIKATSFRHCHSWGHNRIFISDKNPNEKLCRVGLFWDLDNKPPNSIPPYEVANKLRIAAASFGVVRHMVAYANSHTFSNVPHIVRERRKERELLYRLEDKGVIKRNEPHVCRVCGRKFYTNEKLVNHFKQLHEREHAKRLNRIESARGSRKVKLVGQYAMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECLVLVSDDSDFVDVIKEAKLRCLKTVVIGDFSSDGVLKRTADTAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKLNLDDVVPETSGDDDIDDDYKDDRGPWWKLDSDDNGVANR* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2771 411 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
Mtr3g2771 411 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 86 407 - -
Mtr3g2771 411 Pfam NYN domain 245 328 IPR021139 GO:0004540
Mtr3g2771 411 Gene3D - 89 335 - -
Mtr3g2771 411 MobiDBLite consensus disorder prediction 378 411 - -
Mtr3g2771 411 CDD PIN_LabA-like 183 314 - -
Mtr3g2771 411 PANTHER - 86 407 - -
Mtr3g2771 411 ProSitePatterns Zinc finger C2H2 type domain signature. 175 196 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2771 85 411 C2H2 Transcription Factor Family AT4G12240 58.383 2.05e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g2771 NYN 2.5e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2771 - - lja:Lj3g3v3326020.1 538.495