LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2741	ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGCTACCCAGAGCACTCAAGCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTCTTCATCGGAGGCCTTTCTTACAATGTTGATGATCAGTCTCTTAGGGATGCATTTACAACCTACGGAGATGTGGTTGAGGCTAGAGTTATCACTGATAGAGAGACTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCACCAGTGAAGAGTCCGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGGAGAAACATCCGTGTGTCCTATGCAAATGATAGACAGGCTGGCGGACCTCGTCCCGGAGGTGGCTACGGCGGCGGTGGTGGATACAGCGGCGGCGGTGGTGGATACAGCGGAGGCGGTGGCGGTGGTTGGTGA	441	0.5079	MAFCNKIGNLLRQGATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGYSGGGGGYSGGGGGGW*	147

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2741	146	Gene3D	-	14	146	IPR012677	-
	Mtr3g2741	146	SUPERFAMILY	RNA-binding domain, RBD	25	145	IPR035979	GO:0003676
	Mtr3g2741	146	PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	1	145	-	-
	Mtr3g2741	146	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL	1	145	-	-
	Mtr3g2741	146	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	38	107	IPR000504	GO:0003723
	Mtr3g2741	146	MobiDBLite	consensus disorder prediction	112	146	-	-
	Mtr3g2741	146	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	36	113	IPR000504	GO:0003723
	Mtr3g2741	146	SMART	rrm1_1	37	109	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2741	Mtr-Chr3	41409164	41411135	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2741	36	116	Eukaryotic Initiation Factors Gene Family	AT1G49760	35.294	6.96e-09	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2741	-		-	gmx:100527220	187.193

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g2741	3	41409164	41411135	Mtr3g2741	3	41409164	41411135	ECH