Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2725 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCCGCGGCCGAGAATGCACCAACACCACCACCTTCTGCTGCTGCTGCTGTTGCTAACAATGCTGCCAACACTCGTCCTGTTTACGTTCCTCCTCATCTAAGGAACCGTGGACCTTCAGCACCTGCACCAGCAGCACCTGCTTTCGATAACTCCGGATCGCGTTGGGCACCTCCCCCTAGGAACGATTATCGCGGTGGTGGTGGAGGTCGAGGTGGCGGTGGTTATGGGAACAGAGGTGGTGGTGGTTGGGATCGTCGTGAAGCAAATCCATTTGCAGATCAGGATGATTCTGAGGAGCCTGTTACTCAAGAGGAGCAGGAGAATACAGGGATAAACTTTGATGCTTATGAGGATATTCCGGTGGAGACGAGCGGTGGAAATGTTCCTCCGCCGGTTAATACTTTTGCTGAGATTGATTTGGGGGAGGCGCTTAATCAGAATATAAGGCGTTGTAAGTATGTGAAGCCGACACCTGTTCAGCGGCATGCAATTCCGATTTCCCTTGGTGGAAGGGATTTGATGGCTTGTGCGCAGACCGGTTCAGGAAAGACTGCGGCTTTCTGTTTTCCGATAATCAGTGGAATTATGACGGGACAGCCTGCGCAGAGGCCGCCTCGTGGGGTGCGTACCGTGTGTCCGCTTGCTCTTGTTCTCTCGCCAACTAGGGAGCTATCCATGCAGATACACGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTTAGGGTGGTTGTTGCTTACGGTGGTGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGAGTGGACATTCTTGTCGCAACTCCAGGAAGGCTGGTTGATTTGTTGGAAAGAGCCAGAGTTTCACTGTCGATGATTCGGTATCTGGCCTTAGATGAGGCAGATAGGATGCTTGATATGGGTTTTGAGCCACAGATTAGAAAGATTGTTGAACAAATGGACATGCCTCCGGCAGGTGTCAGACAAACTATGTTGTTCAGTGCCACTTTTCCGAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACCGATTTAATTGACCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAAAGAGCAAATGGCGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCGCTAGAACACTGGTTGTGTCTTAATAATTTCCCAGCAACTACTATTCATGGTGACAGGTCTCAACAGGAAAGAGAGGCAGCATTAAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCTACTGATGTGGCTGCACGTGGTCTTGACATACCACATGTTGCACATGTAGTTAACTTTGACCTTCCCAATGACATTGATGATTATGTACACCGTATTGGAAGGACAGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATACATCTATGGCAAGATCTCTACAAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTCGCTGCACGTTCATCCTTTGGTGGAGGAAAGAACCGTCGTTCAGGTGGAGGCCGATTTGGTGGCCGCGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGTGGCGGTGGATACGGGGCTTCTGGTGGATATGGTGGAGGAGGATATGGTGGTGGGTATGCAGGAAATAGCGCCGGTCCTGGGGTGACTAGTGCATGGGACTGA 1842 0.487 MRSSWADLAANSAAENAPTPPPSAAAAVANNAANTRPVYVPPHLRNRGPSAPAPAAPAFDNSGSRWAPPPRNDYRGGGGGRGGGGYGNRGGGGWDRREANPFADQDDSEEPVTQEEQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSMARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGGRFGGRDFRREGSFSRGGSDYHGAGNSGGGYGASGGYGGGGYGGGYAGNSAGPGVTSAWD* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2725 613 Gene3D - 363 542 IPR027417 -
Mtr3g2725 613 MobiDBLite consensus disorder prediction 1 121 - -
Mtr3g2725 613 Gene3D - 99 362 IPR027417 -
Mtr3g2725 613 Pfam Helicase conserved C-terminal domain 384 499 IPR001650 -
Mtr3g2725 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Mtr3g2725 613 Coils Coil 509 529 - -
Mtr3g2725 613 CDD DEADc_DDX3_DDX4 145 366 IPR044763 GO:0003724|GO:0005524
Mtr3g2725 613 MobiDBLite consensus disorder prediction 553 569 - -
Mtr3g2725 613 CDD SF2_C_DEAD 372 508 - -
Mtr3g2725 613 MobiDBLite consensus disorder prediction 543 583 - -
Mtr3g2725 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 360 IPR014001 -
Mtr3g2725 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 538 IPR001650 -
Mtr3g2725 613 SMART helicmild6 418 499 IPR001650 -
Mtr3g2725 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 574 - -
Mtr3g2725 613 SMART ultradead3 163 375 IPR014001 -
Mtr3g2725 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 517 IPR027417 -
Mtr3g2725 613 Pfam DEAD/DEAH box helicase 168 349 IPR011545 GO:0003676|GO:0005524
Mtr3g2725 613 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 42 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2725 Mtr-Chr3 41225789 41231910 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2725 133 531 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 1.92e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2725 K11594 - gmx:100781743 868.996