Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2716 ATGAGAGGAAGAAGCTACAGTCCATCACCACCACCGCGTTACAGCAGAAGAGGCGGCGGAGGAGGAGGAAGAAGTCCAAGTCCTCGTCGGCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTTCTTGTTCGTAATCTTCGCCATGACTGTAGGCCTGAAGATCTTCGTAGACCTTTCGGTCATTTTGGTCCTCTTAAGGATATTTATCTCCCCAAAGATTATTACACTGGACAACCTCGTGGTTTTGGTTTTATTCAATTTGTGGATCCTGCGGATGCTGCTGATGCTAAATATCATATGGATGGTCAAGTTCTTCTCGGTAGGGAGATAACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGTAGCGGTCGGCATTCTGATCGAAGGAGGTCTCCTCCACGTTATTCTCGTTCACCCCGCTATTCCCGGTCTCCACCTCGTCACAGATCTCGCTCTCGCGGCAGTCGTGACTATCATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTATCACCTGAGGATAGAAGGCACAGTCGAGAAGGGTCACAACACAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAGAACGGGGATGCGAGAAGCCGTAGTCAGAGTCCAGTGAAAGGCTCAGTCGAGAGCAGAAGTCCAAGTCCGAGCCGTGATGTCAGGGCAGCATCCCGCAGTAGGTCTCCCAGTCAGTGA 747 0.506 MRGRSYSPSPPPRYSRRGGGGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGREITVVFAEENRKKPTEMRVRERSSGRHSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYHSPPPKRREYSRSVSPEDRRHSREGSQHSRERSYSRSPPKNGDARSRSQSPVKGSVESRSPSPSRDVRAASRSRSPSQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2716 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Mtr3g2716 248 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 232 - -
Mtr3g2716 248 MobiDBLite consensus disorder prediction 167 208 - -
Mtr3g2716 248 MobiDBLite consensus disorder prediction 1 41 - -
Mtr3g2716 248 Gene3D - 31 147 IPR012677 -
Mtr3g2716 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 232 - -
Mtr3g2716 248 SMART rrm1_1 42 115 IPR000504 GO:0003723
Mtr3g2716 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Mtr3g2716 248 MobiDBLite consensus disorder prediction 209 248 - -
Mtr3g2716 248 MobiDBLite consensus disorder prediction 119 146 - -
Mtr3g2716 248 MobiDBLite consensus disorder prediction 119 248 - -
Mtr3g2716 248 SUPERFAMILY RNA-binding domain, RBD 40 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2716 Mtr-Chr3 41171458 41173988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2716 41 150 Eukaryotic Initiation Factors Gene Family AT4G34110 30.631 3.24e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2716 K12900 - gmx:100775883 283.878