Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2712 ATGGACGAAACAATGGCGGCAAGATATTGGTGTCACGCGTGTTCTCAAATAGTCAGTCCCGTCATGGGAATGGAGATCAAATGTCCACTTTGCCAAAGTGGATTTATTGAAGAAATGAGCAGTGCTACTGGTATCAGTGACTTGCAAAATACACCAGAAACTGATTTTGGAGTGGATCGTTCTCCCTCTCTTTGGGCACCAATCTTGCTAGGCATGATGGGTAATCCGCGGCTTCGTCGAAGATTGAGACGAATAGAGCTTGAAGATGATTATGAAAGTGGTAATCGTGATGATGATCATGGTGGTGTAGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGAAGGAGGAGAAGAAGCTCAGCTACCATTCAGCAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAATCACACGAGAATACTGACAGTGATGACCGTGTTAGGGAAAGAGAAAGAGAGCATGTAATCTTGATTAATCCTTTTAATCAGACTATTATTGTTCAAGGTTCCTATGATTCAAACCGAGATCAAAGTGATAATCATAACCCAATTGGGGCTCTTGGTGACTATTTCGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGGTATGGAACTCCACCTGCACCGAAGGAAGCCGTTGAATCTCTACCTACTGTGAAGATTAACGAGAATTTGCAGTGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTACCCTGGCTGGAGCTTCATAGTTCTTGCCCTGTTTGCAGGTCTCAATTGCGAGTGGATGAACCTAAGCAAGACTCTGATGTGTCAAGGAATCACAGAAATCAAAGGGATGATGAAATTATTGGACATGCCAATGCCAATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCATCTTCTAGTTCCAATGCAAATGGAAATGGTACTCAATCAGAAAGAAACTGA 1071 0.4258 MDETMAARYWCHACSQIVSPVMGMEIKCPLCQSGFIEEMSSATGISDLQNTPETDFGVDRSPSLWAPILLGMMGNPRLRRRLRRIELEDDYESGNRDDDHGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSESHENTDSDDRVREREREHVILINPFNQTIIVQGSYDSNRDQSDNHNPIGALGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVESLPTVKINENLQCSVCLDDFEVGSEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDEPKQDSDVSRNHRNQRDDEIIGHANANAEGDSEGRSPSGGRRFSFPWPFNGLFSSSSSSSNANGNGTQSERN* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2712 356 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 338 - -
Mtr3g2712 356 MobiDBLite consensus disorder prediction 284 308 - -
Mtr3g2712 356 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Mtr3g2712 356 SUPERFAMILY RING/U-box 227 288 - -
Mtr3g2712 356 MobiDBLite consensus disorder prediction 337 356 - -
Mtr3g2712 356 MobiDBLite consensus disorder prediction 284 328 - -
Mtr3g2712 356 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Mtr3g2712 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 338 - -
Mtr3g2712 356 SMART ring_2 237 277 IPR001841 -
Mtr3g2712 356 CDD RING-H2_RNF126_like 236 278 - -
Mtr3g2712 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 283 IPR013083 -
Mtr3g2712 356 Pfam Ring finger domain 236 278 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2712 Mtr-Chr3 41115443 41117871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2712 134 284 C3H Transcription Factor Family AT1G26800 37.255 1.79e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2712 K11982 - gmx:100784876 476.863