Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2701 ATGGTGAGTGTACCTCACTTTGAAGAAGCTGTTGAGCCACCAGCTTTACCTCCATCACCTCCTGATGTGCTGTCTAGTATGGAAGCGGAACCAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCGAGTGTCGGAACCACAGGAAAACGCATACATTTGCTTGCAAATTTCTTTAAAGCTGCTGCCGATGCTACAGATGCAACCTTTTCCCAGTATAATGTTGCTGTCACTTCAGAAGATAAAAGAACTGTTGAAAGCAAGGGCATCAGGAGAAAACTGATTAATAGGCTTCACCAAACATACTCTTCTGAACTTGGTGGCAAAAGCTTTGCGTACGATGGAGAAAGAACTTTGTACACAGTGGGTCCTCTTCCAGATAATAAATTTGAGTTCAATGTATTTCTTGAAGAAACATTTGCAAGCACTGAGAGTTTTGGTGCTAATGGAAGCCCTCGCGAGGAAAATAAAAGGTCAAAACGTTCTTTTCAGTCGAAGACATTCACAGTGGAGATAAGTTTTGCTGCCAAAATACCCTTGCAGTCCATTGTTCTTTCCCTTAAAGGGATCGAGTCATATGCTAATTCTCAGGATGCATTGAGGGTTCTTGATACCGTACTGAGGCAGCAAGCAGCTAACAGAGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATAATGACTTGAGGAATTTCATCGATGTTGGAGGCGGAGTAGAAGGAGTTCGGGGTATTCATTCCAGTTTTCGTCTTACAGAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACAACGATTGTAAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATCCTTAAAAATTTAAGAGTTCGTGCTACACATCGTAACCAAGAATTCAAAATTTCGGGCATGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATGAAAATTGGAGAAGACAATAACACGGAGCAGACAGTGGATATTACTGTATATGAGTATTTCGCTAAACACCGTGGCATTGAGCTGACCTCTTCAGCTTACTTTCCATGTCTTGATGTTGGGAAGCCAAATCGACCCAACTTTTTGCCCCTGGAGCTATGTTCACTTGTTCCCCTTCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAAAATCGAAGTTCTGACAAATGCTATTGGAAATTCTGGCTATGATGATGATGCTGTTCTTGCCGCATGTGGCATTTCTATTGACAAGCAATTTACTCCAGTTGAAGGTAGAGTTCTTGAGGCACCAAAGTTGAAGGTAGGTAAGAATGAGGACTGCTTTCCCAATAATGGAAGGTGGAATTTTAAAACGAAGAAATTTCTACAACCATCACATATCGGTTATTGGGCTGTTGTAAACTTTTCTAAACAATGTGATACTAGTTACATAACAAGGGAGCTGATTAAATGTGGAATGAGCAAGGGAATGAATATTGAACGGCCATTTACTTTATTAGAGGAAGAAGCACAAATGAGAAAATCTAACCCTGTTGCACGGGTTGAAAAGATGTTTTCCTTGCTGCAATCAAAACTTACTGATGATCCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGTCTGAGTGATGTTGGGGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACAATGATTTTAGGGATGGATGTCTCTCATGGATCCCCTGGCCGATCAGATATTCCATCAATAGCTGCTGTTGTTGGATCTCGATGCTGGCCTCTAATTTCGAGATATAGAGCATCTGTAAGATCACAGTCTCCTAAGGTGGAGATGATTGATTCTCTATTCAAGCTTGTGGATAAGATGAATGATGATGGTATTTTAGAAAAAAAGGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTGGTAACCGCAGACCAACTCAAATTATTCTCTTCAGGGATGGAGTTGGTGAATCTCAATTTCAACATGTTTTAGATATAGAGCTTAACCAGATAATAAAGGCCTATAAACATATTGATGGGGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATACAAAGCTGTTTCAAGCTAATGCTCTGGAAAAAAACGTTCCTCCTGGGACAGTTGTTGATACAAACATTGTGCATCCAAGAAATTACGATTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGTCTAGGCCTGTGCATTATCATGTGTTGCTTGATGAAATTGGATTCTCGTCAGATGGCTTGCAAAACTTGATCAATTCGCTGTCTTATGTGAACCAGAGGAGCACAGCTGCAACCTCAATTGTGGCACCTATATACTATGCCCACCATGCTGCAGCTCAAATGAGAAAATTTATGAATTTTGATGATTTATCAGAAGCATCTCCAAGTCCCGATTCAGAGGGAAACATCCCCATTCAAGAGCTTCCAAAGTTACATTCAGATGTCAGGGACTCCATGTTCTTCTGTTGA 2727 0.4078 MVSVPHFEEAVEPPALPPSPPDVLSSMEAEPIALPTYSIISRPSVGTTGKRIHLLANFFKAAADATDATFSQYNVAVTSEDKRTVESKGIRRKLINRLHQTYSSELGGKSFAYDGERTLYTVGPLPDNKFEFNVFLEETFASTESFGANGSPREENKRSKRSFQSKTFTVEISFAAKIPLQSIVLSLKGIESYANSQDALRVLDTVLRQQAANRGCLLVRQSFFHNDLRNFIDVGGGVEGVRGIHSSFRLTEGGLSLNMDVSTTTIVKPGPVIDFLLSNQSVREPRYIDWAKAKRILKNLRVRATHRNQEFKISGMSEKPCIQQLFSMKMKIGEDNNTEQTVDITVYEYFAKHRGIELTSSAYFPCLDVGKPNRPNFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQEKIEVLTNAIGNSGYDDDAVLAACGISIDKQFTPVEGRVLEAPKLKVGKNEDCFPNNGRWNFKTKKFLQPSHIGYWAVVNFSKQCDTSYITRELIKCGMSKGMNIERPFTLLEEEAQMRKSNPVARVEKMFSLLQSKLTDDPKLILCVLPERKNCDIYGPWKRKCLSDVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDSLFKLVDKMNDDGILEKKDDGIIRELLLDFYSSSGNRRPTQIILFRDGVGESQFQHVLDIELNQIIKAYKHIDGDVPKFTVIVAQKNHHTKLFQANALEKNVPPGTVVDTNIVHPRNYDFYMCAHAGMIGTSRPVHYHVLLDEIGFSSDGLQNLINSLSYVNQRSTAATSIVAPIYYAHHAAAQMRKFMNFDDLSEASPSPDSEGNIPIQELPKLHSDVRDSMFFC* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2701 908 SMART Piwi_a_2 556 872 IPR003165 GO:0003676
Mtr3g2701 908 CDD PAZ_argonaute_like 269 386 - -
Mtr3g2701 908 Pfam PAZ domain 273 403 IPR003100 GO:0005515
Mtr3g2701 908 SUPERFAMILY PAZ domain 264 427 IPR036085 GO:0005515
Mtr3g2701 908 Pfam N-terminal domain of argonaute 50 207 IPR032474 -
Mtr3g2701 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 907 - -
Mtr3g2701 908 Gene3D - 623 908 IPR036397 GO:0003676
Mtr3g2701 908 Gene3D - 451 617 - -
Mtr3g2701 908 CDD Piwi_ago-like 432 871 IPR045246 -
Mtr3g2701 908 Gene3D paz domain 263 391 - -
Mtr3g2701 908 Pfam Argonaute linker 2 domain 417 458 IPR032472 -
Mtr3g2701 908 Pfam Mid domain of argonaute 467 518 IPR032473 -
Mtr3g2701 908 ProSiteProfiles Piwi domain profile. 556 872 IPR003165 GO:0003676
Mtr3g2701 908 MobiDBLite consensus disorder prediction 1 24 - -
Mtr3g2701 908 Pfam Argonaute linker 1 domain 219 267 IPR014811 -
Mtr3g2701 908 ProSiteProfiles PAZ domain profile. 297 387 IPR003100 GO:0005515
Mtr3g2701 908 PANTHER PROTEIN ARGONAUTE 6 32 907 - -
Mtr3g2701 908 Pfam Piwi domain 556 872 IPR003165 GO:0003676
Mtr3g2701 908 SUPERFAMILY Ribonuclease H-like 540 870 IPR012337 -
Mtr3g2701 908 SMART DUF1785_2 217 269 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2701 Mtr-Chr3 41046879 41056106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2701 42 908 Eukaryotic Initiation Factors Gene Family AT1G48410 36.492 1.30e-163 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2701 K11593 - gmx:100778875 1303.12