Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2680 ATGGGTCGGTGCTGCCGAGCTGCGTCACGCTCCTCTCCCATTGCTGCTGACGACAACAGATCCAAGAGAAAAAAGGTTGCCTTAAATGCTGACAATTTAGAAACTTCATCTGCAGCAGGCATGGGAATAACTACTGATGGCAAAGTATCACTATATCACTGTAATTACTGCAACAAAGATATTTCTGGGAAGATTCGCATCAAATGTGCCGTGTGTCAAGATTTTGATCTCTGCATTGAGTGCTTTTCTGTTGGTGTTGAGTTAACTCCTCATAAAAGCAATCATCCGTATCGGGTTATGGATAATCTATCTTTTCCGCTTATATGTCCAGATTGGAGTGCAGAGGAAGAGATGTTACTTCTTGAGGCCCTCGACATGTATGGATTTGGGAATTGGAATGATGTTGCAGACAACATTGGAACGAAAAGCAAATCTCAGTGTATTGACCACTATAATACTGTATATGTGAATTCACCATGTTTTCCTGTACCTGATTTGTCTCATTTTTCGGGAAAGAACAAAGAGGAACTCCTTGCCATGGCAAAGGGAAATCAAGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAACCTCTCTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAACCACTAATCAAACAATGTCTAGGCTAACCTCAGCACACGATAAAGCTCTTTCAAGTTCAATCAAGAAGGCTTCCAATGTGAGCCAGAATAATGATGGAGTTAAGGTGGAAGAATCTCAAGCAGGTCGGAGCATCGGTGAAAAGAAACCTAAATTATCTGGGGAATATAGGCCTTCTATGAAAGTGTTGAGTGGGTACAATTCTAAGAGAGGTGACTTTGATATTGAATATGACAATGATGCTGAGCAAGTTTTGGCAGAAATGGAATTTTTGGACACTGATACTGAAGCTGAACGTGAAATGAAACTGCAAGTGCTCCGTATTTACTCAAAAAGGTTAGATGAACGAAAGCGCAGAAAAGATTTTATACTTGAAAGAAATTTACTTTGTCCCAATCCTTTTGAGAAATATCTCTCACCTGAAGAGCTTCAAATATGCGAACAGTACAAGGTCTTCACGCGATTTCACTCAAAAGAAGAGCACGAGGAGTTGCTAAAAACCATTATTAAAGAACACCGACTTGCCAAAAGAATACAAGAGTTAAAGGAAGCCAGAATTGCTGGCTGTGTAACTGCTGCTGAAGCATATCAATTTATTGAACAAAAGAGGACAAAAGAAGCCGAACAAGGTGACTGTAAAGAAAGTGGTCAGATTGGAACAGGTGGCAAGACTTCACAGAGACCAAATGTTTCCAAAGTAGAGCTTGGTAGTAGCCCGCGCAGTATCCATAAGGGCACTACAGAATCATTTCCTGGTATCAAGGATGCGCCAGCTGCCATACAAGATATCGCAAGGACACTAGAAGAATGGGATATCAGTGATTTTGATGGGGCTGAGTTGCTCTCTGAATCTGAAATAAAGCTTTGTAACGATATCAGAATGTTGCCGCCACACTACCTCAACATTACGCGGATTATGCAATTAGAAATTTCAAATGGCAGAGTAACCAAGAAATCTGATGCATATCCACTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTTCAAGAAAAATGA 1698 0.404 MGRCCRAASRSSPIAADDNRSKRKKVALNADNLETSSAAGMGITTDGKVSLYHCNYCNKDISGKIRIKCAVCQDFDLCIECFSVGVELTPHKSNHPYRVMDNLSFPLICPDWSAEEEMLLLEALDMYGFGNWNDVADNIGTKSKSQCIDHYNTVYVNSPCFPVPDLSHFSGKNKEELLAMAKGNQVKKEFPPNAELTLKEEPLFSDGINSEESKKAETTNQTMSRLTSAHDKALSSSIKKASNVSQNNDGVKVEESQAGRSIGEKKPKLSGEYRPSMKVLSGYNSKRGDFDIEYDNDAEQVLAEMEFLDTDTEAEREMKLQVLRIYSKRLDERKRRKDFILERNLLCPNPFEKYLSPEELQICEQYKVFTRFHSKEEHEELLKTIIKEHRLAKRIQELKEARIAGCVTAAEAYQFIEQKRTKEAEQGDCKESGQIGTGGKTSQRPNVSKVELGSSPRSIHKGTTESFPGIKDAPAAIQDIARTLEEWDISDFDGAELLSESEIKLCNDIRMLPPHYLNITRIMQLEISNGRVTKKSDAYPLFKFSPSKIDRIYDMLVEKGVVQEK* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2680 565 ProSitePatterns Zinc finger ZZ-type signature. 54 81 IPR000433 GO:0008270
Mtr3g2680 565 Gene3D - 106 157 - -
Mtr3g2680 565 SUPERFAMILY RING/U-box 52 114 - -
Mtr3g2680 565 Pfam Myb-like DNA-binding domain 111 153 IPR001005 -
Mtr3g2680 565 MobiDBLite consensus disorder prediction 435 462 - -
Mtr3g2680 565 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 17 563 - -
Mtr3g2680 565 SUPERFAMILY Homeodomain-like 105 158 IPR009057 -
Mtr3g2680 565 ProSiteProfiles SWIRM domain profile. 478 565 IPR007526 GO:0005515
Mtr3g2680 565 ProSiteProfiles SANT domain profile. 107 159 IPR017884 -
Mtr3g2680 565 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 159 IPR017930 -
Mtr3g2680 565 SUPERFAMILY Homeodomain-like 483 564 IPR009057 -
Mtr3g2680 565 Pfam Zinc finger, ZZ type 52 84 IPR000433 GO:0008270
Mtr3g2680 565 CDD ZZ_ADA2 52 100 IPR041983 -
Mtr3g2680 565 SMART sant 108 157 IPR001005 -
Mtr3g2680 565 CDD SANT 112 154 IPR001005 -
Mtr3g2680 565 ProSiteProfiles Zinc finger ZZ-type profile. 49 105 IPR000433 GO:0008270
Mtr3g2680 565 Gene3D - 479 564 IPR036388 -
Mtr3g2680 565 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 17 563 IPR034318 GO:0003713|GO:0006357|GO:0035065
Mtr3g2680 565 MobiDBLite consensus disorder prediction 425 468 - -
Mtr3g2680 565 Gene3D - 46 101 IPR043145 -
Mtr3g2680 565 ProSiteProfiles Myb-like domain profile. 112 155 IPR001005 -
Mtr3g2680 565 MobiDBLite consensus disorder prediction 207 270 - -
Mtr3g2680 565 MobiDBLite consensus disorder prediction 214 254 - -
Mtr3g2680 565 PIRSF Txn_adaptor_ADA2 39 565 IPR016827 GO:0003713|GO:0006357|GO:0035065
Mtr3g2680 565 SMART zz_5 48 93 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2680 Mtr-Chr3 40822804 40829864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2680 1 561 EF-hand Containing Proteins AT3G07740 50.611 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g2680 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2680 K11314 - gmx:100779424 808.905