Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2672 ATGACAACCATGGTTGAAGCTTTAGGAATGTTTATGTTCACCAACACTACCACTCTTATTCCTGCTTTTAACCAAACAATACACAAAACAACACATCTTGGTCTCTCACGTAGAAACCATGCTCATTTTACACTCTCTGCAACCTCATCATTGATTGAAACTATTCCTTGGGGATGTGAGAATGATTCAATTGAAAATTCATCTTCTCTTCAGAAATGGTTGTCTCAGTCTGGTCTTCCTTCTCAGAAGATGTCCATTGATAAAGTTGATGTAGGTGAGAGAGGTCTTGTTGCTTTGAACAATATTAGGAAAGGAGAGAAGCTTCTCTTTGTTCCTCCTCAACTTGTCATCACTCCTGATTCTGAGTGGAGCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGTCTCATGAAATCTTCAAGATGGTTCAGTTATATATCAGCTTTACCTCGTCAACCATATTCACTTCTTTACTGGTCACAAGCAGAGCTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGACTAATAATGTTATTGGAACATACAATGATATGAGGGTTAGAATATTTTCCAAATACCCCGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCGTTCGGCATTCTTTTTTCGCGCATGGTTCGGTTGCCCTCTATGGATGGAAAGAATGCATTGGTTCCTTGGGCAGATATGATGAATCATAGTTGTGAGGTGGAGACTTTTTTGGATTACGATAAATCGTCAAAGGGGATTGTCTTTCCGACGGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAACGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACAAATCCAAGTGATTCAGTTGAGTTGTCACTGTCACTAAAAAAATCCGATGAGTCCTATAAGGAGAAGTTGGAATTGTTGAAGAAATATGGATTATCAGGATCTCAGTGTTTTCCTATAAGGGTTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAAAAGGACTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTTATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAACAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCCCCGAAACAACTCAACAGAAGACTCTTTCTAAAACAGCTAGCCGTGGACTTGTGTAATAGCGAGCGCAGGATATTGTTTCGTGCTCAATATATATTGCGAAGAAGACTGAGGGATATGAGGACTGGTGAATTAAAAGGCTTGAAAATCTTTAATGGGTTCTGGAATTTTTTCCAATGA 1494 0.3989 MTTMVEALGMFMFTNTTTLIPAFNQTIHKTTHLGLSRRNHAHFTLSATSSLIETIPWGCENDSIENSSSLQKWLSQSGLPSQKMSIDKVDVGERGLVALNNIRKGEKLLFVPPQLVITPDSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTNNVIGTYNDMRVRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKNALVPWADMMNHSCEVETFLDYDKSSKGIVFPTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLKKSDESYKEKLELLKKYGLSGSQCFPIRVTGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDLRYPEIEEQALQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCNSERRILFRAQYILRRRLRDMRTGELKGLKIFNGFWNFFQ* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2672 497 Pfam Rubisco LSMT substrate-binding 331 464 IPR015353 -
Mtr3g2672 497 ProSiteProfiles SET domain profile. 82 298 IPR001214 GO:0005515
Mtr3g2672 497 PIRSF RMT_SET 10 494 IPR011192 GO:0009507|GO:0030785
Mtr3g2672 497 CDD SET_RBCMT 76 312 IPR044431 GO:0016279|GO:0018022
Mtr3g2672 497 Gene3D - 317 481 IPR036464 -
Mtr3g2672 497 PANTHER - 52 292 - -
Mtr3g2672 497 Gene3D set domain protein methyltransferase, domain 1 27 311 - -
Mtr3g2672 497 Pfam SET domain 94 298 IPR001214 GO:0005515
Mtr3g2672 497 SUPERFAMILY SET domain 68 315 IPR046341 -
Mtr3g2672 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 52 292 - -
Mtr3g2672 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 328 486 IPR036464 -
Mtr3g2672 497 SMART set_7 82 304 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2672 69 267 NAC Transcription Factor Family AT3G56570 22.059 3.69e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr3g2672 SET 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2672 - - cam:101500121 837.41