Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr3g2669 | ATGGCTTCAAGAAAGTCCGATAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGTTTAGCCAAAGACACAACCCTAGAGGAGTTTGTGAAGTACTTTGAAAGGTACGGAGAGATAACGGATTCCGTTATCATGAAAGATCGGCATACCGGCCGTCCTCGAGGATTCGGGTTTATCACTTATGCGGATGCTTCTGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGACAAGCAGGTTGAAATCAAGAGGACTATTCCAAAGGGTGCATCTCAAACTAATGACTTCAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAGCAACTGTATCTGAAGATGAGCTCAAGATCTTCTTCTCGAAGCATGGGAATGTTGTGGAGCATGAGATAATACGCGACCACACCACTAAGCGTTCTCGTGGATTTGGCTTTGTCGTTTTTGATAGTGATAAGGCTGTTGATAATTTGTTAGCTGATGGGAACATGATTGATATGGATGATACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCATCTTCTTTTCCTTCATTTGGTAGTGATTCTAGGGCACGTTCTTACAATGGTGGTTTTGGTGGATTTGACGATTCTTATGGAAGTTTTCCTGGCGGAGGTTATGGCCCTGCATCTTATAGGTCGCTTGGAGGTATTGGTGGTAGGTTTAGCGATTATGGTGGGTATGGAGGTGGAGATGATTTCAGTGGTGGTTTTGGAGGTTATGGAGGCAGTGGTGGTGCTGGTGGTTATGCGGGATATAGAGGAGGAGAATCCTCATTCGGTTACTCTGGCCGTTATGGATCCTACATGGGGGGCCTTGGTGGTGGATATGGTGGTGGTGGGTTAGGCCCATATGGGAGAGGTGGGGGCTATGGAAGTTACGGTGGTCCAGGCACTGGTGGAGGTTATGAATCTGGCCCTGGTACTGGTTTTGGTGGGACAGGAGGACCCTATTCTAGTAGGGGAGGTTATGGGGGCAGTAGTCGTTACCATCCTTACACAAGATAG | 1059 | 0.4665 | MASRKSDNPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKKSSNSSSFPSFGSDSRARSYNGGFGGFDDSYGSFPGGGYGPASYRSLGGIGGRFSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGGESSFGYSGRYGSYMGGLGGGYGGGGLGPYGRGGGYGSYGGPGTGGGYESGPGTGFGGTGGPYSSRGGYGGSSRYHPYTR* | 353 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr3g2669 | 352 | Gene3D | - | 97 | 225 | IPR012677 | - | |
Mtr3g2669 | 352 | PANTHER | OS08G0320100 PROTEIN | 1 | 352 | - | - | |
Mtr3g2669 | 352 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 212 | IPR035979 | GO:0003676 | |
Mtr3g2669 | 352 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
Mtr3g2669 | 352 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 97 | IPR035979 | GO:0003676 | |
Mtr3g2669 | 352 | Gene3D | - | 18 | 96 | IPR012677 | - | |
Mtr3g2669 | 352 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
Mtr3g2669 | 352 | SMART | rrm1_1 | 19 | 90 | IPR000504 | GO:0003723 | |
Mtr3g2669 | 352 | MobiDBLite | consensus disorder prediction | 180 | 199 | - | - | |
Mtr3g2669 | 352 | MobiDBLite | consensus disorder prediction | 313 | 352 | - | - | |
Mtr3g2669 | 352 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 82 | IPR000504 | GO:0003723 | |
Mtr3g2669 | 352 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 166 | IPR000504 | GO:0003723 | |
Mtr3g2669 | 352 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 1 | 352 | - | - | |
Mtr3g2669 | 352 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 94 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr3g2669 | Mtr-Chr3 | 40747275 | 40751097 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr3g2669 | 4 | 169 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.087 | 1.62e-12 | 66.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr3g2669 | K12741 | - | gmx:100801373 | 360.147 |