Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2669 ATGGCTTCAAGAAAGTCCGATAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGTTTAGCCAAAGACACAACCCTAGAGGAGTTTGTGAAGTACTTTGAAAGGTACGGAGAGATAACGGATTCCGTTATCATGAAAGATCGGCATACCGGCCGTCCTCGAGGATTCGGGTTTATCACTTATGCGGATGCTTCTGTTGTTGATCAAGTTATTCAGGAGAATCACATCATCAATGACAAGCAGGTTGAAATCAAGAGGACTATTCCAAAGGGTGCATCTCAAACTAATGACTTCAAAACTAAGAAGATTTTTGTTGGTGGCATTCCAGCAACTGTATCTGAAGATGAGCTCAAGATCTTCTTCTCGAAGCATGGGAATGTTGTGGAGCATGAGATAATACGCGACCACACCACTAAGCGTTCTCGTGGATTTGGCTTTGTCGTTTTTGATAGTGATAAGGCTGTTGATAATTTGTTAGCTGATGGGAACATGATTGATATGGATGATACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCATCTTCTTTTCCTTCATTTGGTAGTGATTCTAGGGCACGTTCTTACAATGGTGGTTTTGGTGGATTTGACGATTCTTATGGAAGTTTTCCTGGCGGAGGTTATGGCCCTGCATCTTATAGGTCGCTTGGAGGTATTGGTGGTAGGTTTAGCGATTATGGTGGGTATGGAGGTGGAGATGATTTCAGTGGTGGTTTTGGAGGTTATGGAGGCAGTGGTGGTGCTGGTGGTTATGCGGGATATAGAGGAGGAGAATCCTCATTCGGTTACTCTGGCCGTTATGGATCCTACATGGGGGGCCTTGGTGGTGGATATGGTGGTGGTGGGTTAGGCCCATATGGGAGAGGTGGGGGCTATGGAAGTTACGGTGGTCCAGGCACTGGTGGAGGTTATGAATCTGGCCCTGGTACTGGTTTTGGTGGGACAGGAGGACCCTATTCTAGTAGGGGAGGTTATGGGGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1059 0.4665 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKKSSNSSSFPSFGSDSRARSYNGGFGGFDDSYGSFPGGGYGPASYRSLGGIGGRFSDYGGYGGGDDFSGGFGGYGGSGGAGGYAGYRGGESSFGYSGRYGSYMGGLGGGYGGGGLGPYGRGGGYGSYGGPGTGGGYESGPGTGFGGTGGPYSSRGGYGGSSRYHPYTR* 353
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2669 352 Gene3D - 97 225 IPR012677 -
Mtr3g2669 352 PANTHER OS08G0320100 PROTEIN 1 352 - -
Mtr3g2669 352 SUPERFAMILY RNA-binding domain, RBD 100 212 IPR035979 GO:0003676
Mtr3g2669 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Mtr3g2669 352 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Mtr3g2669 352 Gene3D - 18 96 IPR012677 -
Mtr3g2669 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Mtr3g2669 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Mtr3g2669 352 MobiDBLite consensus disorder prediction 180 199 - -
Mtr3g2669 352 MobiDBLite consensus disorder prediction 313 352 - -
Mtr3g2669 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 82 IPR000504 GO:0003723
Mtr3g2669 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Mtr3g2669 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Mtr3g2669 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr3g2669 Mtr-Chr3 40747275 40751097 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2669 4 169 Eukaryotic Initiation Factors Gene Family AT1G71770 26.087 1.62e-12 66.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2669 K12741 - gmx:100801373 360.147
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2669 3 40747275 40751097 Mtr5g3518 5 43942207 43947053 PCT