Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2667 ATGGGCCTATCAAGTCTTCCAGCACAATCTGAAGGAGTGTTATGCATCATTCTAGTAAACACTGCCATGTCAATATCCATATTCAAAGGCATTATAAGGACTATCCTGCACATTGTTGGTATCATTGCTTCACCATCTTCCTCTCCTTCCCAAGACTACATTCCTCAAAACATACCTGAGTCATATGAAATCCATCTAAGTCCTTCAGATGATTTCGTTGAAGAGTTCAGAAGCAGAACACCAACACTTAGGTTTGATAGTGTGTGTAATAGCTGCAAAGAACCTGAACATGATTGCTCAGTGTGTCTCACTCAATTTGAACCTGAATCAGAGATAAACTATTGCATATCATGTGGCCATGTTTTTCATAAAGTGTGTTTGGAGAAGTGGTTGGATTATTGGAACATTACATGTCCACTTTGTAGGAGTCCTTTAATTCCTGAAGATGATGCATCTTGCTTATGGTAA 468 0.3889 MGLSSLPAQSEGVLCIILVNTAMSISIFKGIIRTILHIVGIIASPSSSPSQDYIPQNIPESYEIHLSPSDDFVEEFRSRTPTLRFDSVCNSCKEPEHDCSVCLTQFEPESEINYCISCGHVFHKVCLEKWLDYWNITCPLCRSPLIPEDDASCLW* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2667 155 SUPERFAMILY RING/U-box 98 147 - -
Mtr3g2667 155 SMART ring_2 99 141 IPR001841 -
Mtr3g2667 155 Pfam Ring finger domain 98 142 IPR001841 -
Mtr3g2667 155 ProSiteProfiles Zinc finger RING-type profile. 99 142 IPR001841 -
Mtr3g2667 155 PANTHER - 1 155 IPR044249 -
Mtr3g2667 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Mtr3g2667 155 SMART ringv_2 98 142 IPR011016 GO:0008270
Mtr3g2667 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2667 Mtr-Chr3 40701901 40703549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2667 1 149 C3H Transcription Factor Family AT2G04240 56.129 2.59e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2667 K16285 - gmx:100786803 246.128