Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2650 ATGAGAAAAAAATCCGTCGTCAGCGGTATTCGCCACCGCCGTAGTATAACACCTTCAACCGCCTCTCCCATTCCTCTCCTCTCCACCACCAACGACGACCACAATGCAACCGTCTACAACAGCAACAGCGACGGCGATGACAACCACCACACTCACACTCCATTTCCCGATTCCGTTCCCGAAACCGTACCCGTTGATTCCTTAGACGATAACATTTGCATTACCTGCAACAAACTCGGAGGCGAATTGCTCGTATGTTCCCAAACCGATTGCCCCGTTTCTGTCCACGTCACTTGCATCGGTTCCGAACCTAAATTCGATGATTCTGGAAACTTCTTTTGTCCTTATTGTGCGTACAAGCGCGCGTTGAAGAAAACTCGAGAGTTAAGAGAAAAAGCGGTTCTAGCGAAGAAAGCCCTTTCTAGCTTTTTAGAAAAACACCAAACAGTGCATAAGGATAAGGAAGAGCAACCTGTTGAACCAGAACCGGAAACGGTTCAGGATCATGTAAACCGGAATGAACCGGAAGCGAATGAACCGGAAGTGGATGAACCAAAAGTTTCTCATTCTGAAGAGGAAAGTAATAATGATAAGGAAAACGATGAAGAAAAGGTTTCTGTATCAGGTAGTTCAGTGAGTGAAACTAAAGATTCTGATTATGAGGTTTCGGTGGCGGAGAAGAAAGTTCGTGCCAGTGTTAAACGTAAGGCTGCTCCTGTGAAAAAAGCATTGCTCAGGGAACGGAAAAATGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGATGACATAGACGAGGAGGAAGTTACTAGCTCCAGAACTTCAAGTCTACGAAAGCGAGTCACGAAGCAGAATATACTGACTGGAAAACGTAAGAGATTGAATTGGACAGCTGAAGAAGAAAAAGTTCTCAAGGAAGGAGTGTTGAAGTTTGCAACAGAAGATCAGAATATACCTTGGAGGAAAATTTTAGAATTTGGTTGCTGCGTGTTTGATAAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAGGAAAATTACCTCCAAGCAAGGATGCAAGTAG 1062 0.4482 MRKKSVVSGIRHRRSITPSTASPIPLLSTTNDDHNATVYNSNSDGDDNHHTHTPFPDSVPETVPVDSLDDNICITCNKLGGELLVCSQTDCPVSVHVTCIGSEPKFDDSGNFFCPYCAYKRALKKTRELREKAVLAKKALSSFLEKHQTVHKDKEEQPVEPEPETVQDHVNRNEPEANEPEVDEPKVSHSEEESNNDKENDEEKVSVSGSSVSETKDSDYEVSVAEKKVRASVKRKAAPVKKALLRERKNGGGGGGSGGGDDIDEEEVTSSRTSSLRKRVTKQNILTGKRKRLNWTAEEEKVLKEGVLKFATEDQNIPWRKILEFGCCVFDKTRTPVDLKDKWRKITSKQGCK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2650 353 MobiDBLite consensus disorder prediction 146 205 - -
Mtr3g2650 353 Pfam Myb-like DNA-binding domain 293 346 IPR001005 -
Mtr3g2650 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 165 IPR013083 -
Mtr3g2650 353 ProSiteProfiles Zinc finger PHD-type profile. 70 120 IPR019787 -
Mtr3g2650 353 ProSiteProfiles Myb-like domain profile. 287 347 IPR001005 -
Mtr3g2650 353 MobiDBLite consensus disorder prediction 219 233 - -
Mtr3g2650 353 MobiDBLite consensus disorder prediction 1 60 - -
Mtr3g2650 353 SMART PHD_3 72 118 IPR001965 -
Mtr3g2650 353 CDD SANT_TRF 295 344 - -
Mtr3g2650 353 SUPERFAMILY Homeodomain-like 290 347 IPR009057 -
Mtr3g2650 353 MobiDBLite consensus disorder prediction 12 44 - -
Mtr3g2650 353 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 176 353 - -
Mtr3g2650 353 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 12 195 - -
Mtr3g2650 353 SUPERFAMILY FYVE/PHD zinc finger 67 126 IPR011011 -
Mtr3g2650 353 SMART sant 291 349 IPR001005 -
Mtr3g2650 353 ProSitePatterns Zinc finger PHD-type signature. 73 117 IPR019786 -
Mtr3g2650 353 Gene3D - 285 349 - -
Mtr3g2650 353 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 176 353 - -
Mtr3g2650 353 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 195 - -
Mtr3g2650 353 MobiDBLite consensus disorder prediction 146 281 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2650 292 347 Single Myb Histone (SMH) Gene Family AT3G49850 49.123 8.40e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g2650 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2650 - - mtr:MTR_3g082160 634.795