Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2619 ATGAACGTAAAGAAATATGATGTGATGATGAGTAGTGTTCCACAAACTGCAAGTTCCCCTCCTACTCTTCCACATATGTATTCAGAAGAACTTCAACTTAAGCTTTACCAAGCTTTCATATTCTCAATTCCTATACTTTTTTCCATTATTCTCTTTCTCCTTTTTTACTTGTTCTATCTCAAGAGAAGAGCTTCTTCTTTCTCTCCACACTTGCTTCCAAGGATCAATATTCCTCCAACTACCTATCGTTATTATTCATCTTCCTCACCTCGTCGATTGGATTTGACCGTGCAATTCTTGGACAAACTTCCTAGAGTTTTGTTTGATGAGGATTTACAAGCAAGGGATTCACTATGTTGTGTTTGTTTGGGAGAATTTGAGGTGAAGGAAGAGTTGCTACAGATTCCATATTGCAAACATGTGTTCCACATTGATTGCATACATCATTGGCTACAATCAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTATCACCAAATTCCTTAATCCTGCACCCCCTATTAATATTATTATATCAGACCCACCTCACCAAGATGCTATCAATTTGGATTCTCCATTACCAAATTCATCATTGCCAGATCAAGCTGGTGCTTCCTCAAATATCATGTCTAGGGAATGA 651 0.3763 MNVKKYDVMMSSVPQTASSPPTLPHMYSEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINIPPTTYRYYSSSSPRRLDLTVQFLDKLPRVLFDEDLQARDSLCCVCLGEFEVKEELLQIPYCKHVFHIDCIHHWLQSNSTCPLCRCSIIPTITKFLNPAPPINIIISDPPHQDAINLDSPLPNSSLPDQAGASSNIMSRE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2619 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Mtr3g2619 216 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Mtr3g2619 216 SUPERFAMILY RING/U-box 97 167 - -
Mtr3g2619 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 14 178 - -
Mtr3g2619 216 MobiDBLite consensus disorder prediction 193 216 - -
Mtr3g2619 216 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 14 178 - -
Mtr3g2619 216 SMART ring_2 119 160 IPR001841 -
Mtr3g2619 216 Pfam Ring finger domain 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2619 Mtr-Chr3 40171700 40173902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2619 24 166 C3H Transcription Factor Family AT4G10150 40.411 2.85e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2619 K19039 - aprc:113858113 272.322