LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2612	ATGACAGAGGTGGCGAGATCAGTAGTTCACGAGGTTATAGGCGATAAAATCACTGACGTCGATGAACCAATAGTCAGTTACATCGTCAACGTCCTCGCCGACGAGGATTTCGACTTTGGCCTCGACGGCGAAGGTGCTTTCGATGCTCTCGGAGATCTCCTCGTCGCCGCCGGATGCGTCCCCGATTTCCCTGAGTGCCGCTCCGTTTGCAGCAAACTTTCGGATAAGTTTGGGAAGCATGGTTTGGTGAAAGCGAAACCAACGGTGCGAAGCCTTGCAGCACCGTTTCGGATGAATGAGGGTTTGGATGACGGTGAAGCTCCGAAGAAGAAACCGGAGCCGGTAGATGGTCCGCTTTTGTCCGAACGCGATAAGTTGAAAATTGAAAGGAGGAAGAGGAAAGATGAACGCCAGAGAGAGGCAAAGTACCAATTGCATTTGGCGGAGATGGAAGCGGTGAGAGCAGGGATGCCTGTTGCGTGTGTGAAGCACGAGGCTGGTGGTGGACACACTGTGAAGGATATTCATATGGATAATTTCACCATCTCTGTTGGTGGTCATGATCTCATTCTTGATGGTTCTGTTACGCTCTCTTTTGGAAGACACTATGGGCTTGTTGGTAGAAACGGGACGGGAAAAACAACTTTCTTGAGGCACATGGCCATGCATGCCATAGACGGCATTCCCAGGAATTGTCAAATATTACACGTTGAGCAAGAAGTTGTTGGTGATGATACATCTGCCTTGCAGTGTGTTCTTAATACTGACATTGAGAGAGCCCAGCTTCTGGAGGAAGAAGCTCATTTAATAGCCAAACAGAGGGAATCTGAGGACAGTACCGAAAAGGGCACTGATGCGAACGGGGCAGTGAAAGGAGATGCTATTTCACAAAGGCTTGAGCAAATATACAAGAGGCTTGAGTTGATTGACGCTGATTCTGCAGAGTCACGAGCAGCGTCCATACTTGCGGGTCTGAGTTTCTCTCCTGAGATGCAGAAGAAGGCAACAAAAACATTTTCTGGAGGGTGGAGGATGCGGATAGCTCTTGCTCGTGCATTGTTCATAGAACCTGATATGTTGCTTCTTGATGAGCCTACGAATCATCTTGATCTCCACGCCGTCTTATGGCTTGAATCGTACTTGGTTAAATGGCCGAAAACATTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGGTGGTTACTGATATAATTCACTTACAAAACCAAAAGCTAACTACATATAAAGGGAATTATGATACTTTTGAGAGGACTAGGGAAGAACAAATTAAAAACCAACAAAAAGCAGTAGAGGCACACGAGCGTTCAAGAGCTCATATGCAGTCCTTCATTGACAAGTTCCGATATAATGCCAAGAGGGCGTCCCTTGTTCAATCTAGAATCAAGGCTCTGGATCGACTGGGCCATGTAGATGCAATTATTAATGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGCGCACCAATTATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGAGGGCCCATTCTATTTAGGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATCGGTAAATCTACTATACTTAAGTTAATTGCTGGGGAACTACAGCCAAGTTCTGGGACTGTCTTCCGTTCTGCCAAGGTTCGTATAGCAGTATTCAGTCAGCACCATGTTGATGGACTTGACTTATCCTCAAATCCTCTTCTTTATATGATGCGTTGCTATCCTGGAGTTCCCGAGCAAAAACTTCGAGGTCACTTGGGTTCTTTTGGTGTAACTGGAAATCTTGCACTTCAACCCATGTACACTTTGTCAGGCGGTCAGAAAAGTAGAGTTGCCTTTGCGAAGATAACTTTTAAGAAGCCACATATAATATTGCTTGATGAGCCATCCAATCATCTTGACTTGGATGCTGTTGAGGCGCTGATTCAAGGTCTTGTGTTATTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCATCTCATATCTGGAAGTGTGGAGGAGCTATGGATTGTATCCGAGGGTAGAGTGGCACCATTCCATGGCACCTTCGCGGAGTATAAGAGGATATTACACTCATCTTAG	2142	0.4561	MTEVARSVVHEVIGDKITDVDEPIVSYIVNVLADEDFDFGLDGEGAFDALGDLLVAAGCVPDFPECRSVCSKLSDKFGKHGLVKAKPTVRSLAAPFRMNEGLDDGEAPKKKPEPVDGPLLSERDKLKIERRKRKDERQREAKYQLHLAEMEAVRAGMPVACVKHEAGGGHTVKDIHMDNFTISVGGHDLILDGSVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGIPRNCQILHVEQEVVGDDTSALQCVLNTDIERAQLLEEEAHLIAKQRESEDSTEKGTDANGAVKGDAISQRLEQIYKRLELIDADSAESRAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDMLLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGNYDTFERTREEQIKNQQKAVEAHERSRAHMQSFIDKFRYNAKRASLVQSRIKALDRLGHVDAIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFRNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFAEYKRILHSS*	714

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2612	713	SMART	AAA_5	528	695	IPR003593	-
	Mtr3g2612	713	SMART	AAA_5	199	412	IPR003593	-
	Mtr3g2612	713	Pfam	ABC transporter	194	367	IPR003439	GO:0005524
	Mtr3g2612	713	Pfam	ABC transporter	520	650	IPR003439	GO:0005524
	Mtr3g2612	713	ProSitePatterns	ABC transporters family signature.	622	636	IPR017871	GO:0005524
	Mtr3g2612	713	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	439	IPR027417	-
	Mtr3g2612	713	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	485	703	IPR027417	-
	Mtr3g2612	713	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	503	712	IPR003439	GO:0005524
	Mtr3g2612	713	MobiDBLite	consensus disorder prediction	102	140	-	-
	Mtr3g2612	713	ProSitePatterns	ABC transporters family signature.	339	353	IPR017871	GO:0005524
	Mtr3g2612	713	MobiDBLite	consensus disorder prediction	99	140	-	-
	Mtr3g2612	713	CDD	ABCF_EF-3	503	695	-	-
	Mtr3g2612	713	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	175	435	IPR003439	GO:0005524
	Mtr3g2612	713	CDD	ABCF_EF-3	175	412	-	-
	Mtr3g2612	713	Pfam	ABC transporter	406	487	IPR032781	-
	Mtr3g2612	713	Gene3D	-	467	712	IPR027417	-
	Mtr3g2612	713	Gene3D	-	132	448	IPR027417	-
	Mtr3g2612	713	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	121	712	-	-
	Mtr3g2612	713	PANTHER	NON-TRANSPORTER ABC PROTEIN	121	712	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2612	Mtr-Chr3	40109606	40119173	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2612	465	664	Calmodulin-binding Proteins	AT2G36910	27.155	6.69e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2612	K06158		-	gmx:100790412	1248.03