Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2573 ATGTCTTCCAACATGAAAATAGATGAAAATTTAGATGGAGAGAGTATTACATTGGAGTCCACACTATCAGAAACTCATGCACCAATTGCAATTCATGAAACTATCCAAAGAGAGACAGAGAATCAGCAAGATTCAAAAACAAGCATAACAAAAGGCAAAACCACCAACGTAGTCCCATTTTACAAACTCTTCTCTTTTGCAGACTCTCTTGATCATGTATTGATGTTTGTGGGAACTATTGGTGCTATTGGAAATGGACTGGCCACACCCTTGATGAATGTAGTCTTTGGAAATTTGATTGATGCATTTGGAAGATCCACAAGCCCTGGAGAAGTAGTTCATGATGTTTCTAAGGTGGCCCTGAATTTTGTATACTTGGCTGTTGGTTCCTTCGTAGGATCATTTTTTCAGGTGTCTTGCTGGATAGTCACTGGGGAGAGACAAGCATCAAGAATTCGAAATTTATACCTCAGAGCAATTTTGAGGCAAGATACGAGCTTCTTTGACATGGAAGAAACTAATACTGGCGAGGTTGTTGGAAGGATGTCAAGTGACACAATTCTTATTCAAGATGCAATGGGTGAGAAGGTAGGACAGTTGATACAGTCAGTGGCAACTTTCATTGGAGGCTTTGTGATAGCATTTGTTAAGGGATGGCTTCTAACCCTTGTCTTGCTATCCTCAATTCCACCTCTTGTCTTTGCTAGTGCTGTAATGAGTATTGTTATTGCAAAAGTGGCATCCCGTAGACAAGTTACCTATTCTGAAGCAGAAACGGTGGTAGAACAGACACTTAGTTCTATTAGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAATCTTTAGCAAAAGCATACAAGAGTGGTGTGCAAGAGGGATTGGTTTCTGGTTTTGGAATCGGTTCAGTTTATTTTATTGTTTTCTGTGCGTATGGTTTGGCTATATGGTTTGGTGGCAAATTGGTAGTAGAGAAAGGGTACACAGGAGGGAACATTATGACCGTAATATTTGCAATAATGACAGGGTCCCTTTCTCTTGGTCAGGCATCTCCTAGCCTCAGCGCTTTAGCTTCAGGACGAGCTGCGGCATTTAAGATGTTTGAAACGATTAACAGGAAACCAGATATTGATGCATATGAAACAACAGGTCAGCAGCTTGATGATATTGGTGGGGACATAGAACTGAGAGAAGTGAGTTTTAGTTATCCTTCAAGGCCAGATCAAGCTATATTCAAAGGATTTTCTCTTTCAATACCAAGGGGAACAACAGCAGCTTTGGTGGGGCAAAGTGGGAGTGGGAAATCAACAGTTATTAACCTGATAGAGAGGCTTTATGATCCACAAGCTGGACAAGTTCTCATTGACGGAATCAACGTAAAAGAATTTCAGCTTAAATGGATTAGACAGAAAATAGGCTTGGTCAGTCAGGAGCCAGTTCTGTTTACCGGCAGCATTAAAGAAAATATTACCTATGGTAAGGATGGTTCGACTGAAAAAGAAGTCAGAGAAGCCGCAGATCTTGCCAATGCTTCTGGGTTCATAGATAAATTTCCACAGGGGCTCGATACAATGATAGGTGAACGCGGAATGCAGCTCTCAGGGGGTCAAAAGCAGAGAGTTGCTATAGCTAGATCAATTTTAAAAGATCCAAGAATTCTTCTTCTTGATGAGGCTACTAGTGCCCTTGATGTGGAATCTGAAAAAATAGTACAGGAGGCACTAGACAAAATCATGATAAACAGAACTACTGTTATTGTGGCCCACCGCTTAAGTACTGTAAGAAATGCCGCTACTATAGCCGTTATTCATCAAGGAAAACTAGTAGAAAAAGGTTCACATGTGGAACTCACTAAAGATCCTGATGGGGCCTATAGTAAGCTCATTAGTTTACAAGAGACTGAGAAGGAGGCAGAAGTACAGAATGTTGCAACTGACTCTGACAGACCAGAAAATATTTCATATTCTTCAAATCAAAGATTTTCTCACTTGCAAACTATAAGCCAAGTTGGAAACAGCGGTCGTCACTCATTCTCAGTATCACATGCACTTTCTACAACAATTGTTCCTCTGGAAACATCTGGTTGGGAAGTTGAAGTTCCTCCTTTAGGAACCTCACAACAACCACCACCTCCAAAAGTACCACTTCGCCGCTTAGCTTATCTAAACAAGCCTGAGATCCCAGTCTTACTTATAGGAACGATGGCTGCAGTCGTAAATGGAGCAATATTACCTTTGTTTGGATTAATGATTGCCAAAATGGTCAATACTTTGTATGAGCCTGCAGATGAACTCCACGAAGATTCAAAGTTTTGGGCATTGATTTTTGTTGTCCTTGGTGTGTCATCTTTCTTAATTTTTCCTACAAGGTCCTACTTTTTTTCCATTGCTGGTGAGAAGTTAGTAAAGAGGGTGCGACTGTTGTGTTTTGAGAAAATAATTCGAATGGAAATGAGTTGGTTTGATGAAACTGAGAATTCAAGTGGTGCACTTGCAGCAAAGCTGTCCACCAATGCTGCTACAGTTAGAGGTTTGGTTGGGGATGCACTTGGTTTACTGGTTCAGAATATAGCTACTGCAATTGCAGGCCTGGTGGTTGCATTTCAGGCAAACTGGAGCCTCGCTCTTATAATTCTTGGTTTGCTACCTCTGTTGGGACTAAATGGATACCTTCAAATGAAGTTTATACAAGGATTTAGTGCAGATGCAAAGAAGTTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTGAGTAACATTAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTTATGGACTTGTACCAAAAAAAATGTGAAGCACCAATTAAGGCAGGCATAAAGCAAGGGATAATAAGTGGAGTTGGTTTCGGGATGTCATTCTTGTTACTGTTTTTGGTCTATGCATGCAGTTTCTATGCTGGAGCAAAACTTGTAGGGGATGGTAAAACATCATTCAAAGAAGTTTTTCTTGTCTTCTTTACCCTAAATATGACAGCTGTTGGAATCTCCCAATCTAGCTCCTTGGCCCCTGATTCGGCCAAGGCAAAATGTGCAGCAATGTCTATTTTAGCTATTATTGATCGAAAATCGAAAATAGATCCAAGTGATGACTCTGGATTGGAACTGGAAGATGTTAAGGGAGAGGTTGAGTTTCACCATGTTAGTTTCAAGTACCCCAGCAGACCTGAGGTTCAAATATTCAGAGATTTTTGCTTGACCATTCATTCACGCAAGACAGTTGCACTGGTAGGAGAAAGTGGAAGTGGAAAATCAACAGTTATCTCATTATTGCAAAGATTCTATGACCTAGATTCAGGTCACATTACAGTTGATGGAATAGAAATCCAAAAGCTTCAGGTTAAATGGTTAAGGCAAAAAATGGGCTTGGTAAGCCAAGAGCCTGTGTTGTTTAATGACACGGTACGAGCTAATATCGCATATGGAAAGGGAAAAGATGCAACAGAAGCAGAGATCATTGCTGCAGCAAAAATGGCAAATGCTCACAAGTTCATTAGTAGTTTGCAGCAGGGCTATGACACCGTTGTGGGGGAGCGAGGATCCAGATTATCGGGTGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCAATATTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCCCTTGATGCTGAGTCCGAAAAAGTAGTTCAGGATGCACTGGATCGAGTTATGGTTGACCGAACCACAATTATAGTGGCACACAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTGGTGAAGAATGGGGTCATTACAGAGAAAGGAAATCATGAAACATTGATCAACAAAGGAGGTCACTATGCTTCCATTGTAGATTCAAATCACTGA 3891 0.4086 MSSNMKIDENLDGESITLESTLSETHAPIAIHETIQRETENQQDSKTSITKGKTTNVVPFYKLFSFADSLDHVLMFVGTIGAIGNGLATPLMNVVFGNLIDAFGRSTSPGEVVHDVSKVALNFVYLAVGSFVGSFFQVSCWIVTGERQASRIRNLYLRAILRQDTSFFDMEETNTGEVVGRMSSDTILIQDAMGEKVGQLIQSVATFIGGFVIAFVKGWLLTLVLLSSIPPLVFASAVMSIVIAKVASRRQVTYSEAETVVEQTLSSIRTVASFTGEKQAIAKYNQSLAKAYKSGVQEGLVSGFGIGSVYFIVFCAYGLAIWFGGKLVVEKGYTGGNIMTVIFAIMTGSLSLGQASPSLSALASGRAAAFKMFETINRKPDIDAYETTGQQLDDIGGDIELREVSFSYPSRPDQAIFKGFSLSIPRGTTAALVGQSGSGKSTVINLIERLYDPQAGQVLIDGINVKEFQLKWIRQKIGLVSQEPVLFTGSIKENITYGKDGSTEKEVREAADLANASGFIDKFPQGLDTMIGERGMQLSGGQKQRVAIARSILKDPRILLLDEATSALDVESEKIVQEALDKIMINRTTVIVAHRLSTVRNAATIAVIHQGKLVEKGSHVELTKDPDGAYSKLISLQETEKEAEVQNVATDSDRPENISYSSNQRFSHLQTISQVGNSGRHSFSVSHALSTTIVPLETSGWEVEVPPLGTSQQPPPPKVPLRRLAYLNKPEIPVLLIGTMAAVVNGAILPLFGLMIAKMVNTLYEPADELHEDSKFWALIFVVLGVSSFLIFPTRSYFFSIAGEKLVKRVRLLCFEKIIRMEMSWFDETENSSGALAAKLSTNAATVRGLVGDALGLLVQNIATAIAGLVVAFQANWSLALIILGLLPLLGLNGYLQMKFIQGFSADAKKLYEEASQVANDAVSNIRTVASFCAEEKVMDLYQKKCEAPIKAGIKQGIISGVGFGMSFLLLFLVYACSFYAGAKLVGDGKTSFKEVFLVFFTLNMTAVGISQSSSLAPDSAKAKCAAMSILAIIDRKSKIDPSDDSGLELEDVKGEVEFHHVSFKYPSRPEVQIFRDFCLTIHSRKTVALVGESGSGKSTVISLLQRFYDLDSGHITVDGIEIQKLQVKWLRQKMGLVSQEPVLFNDTVRANIAYGKGKDATEAEIIAAAKMANAHKFISSLQQGYDTVVGERGSRLSGGQKQRVAIARAILKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIIVAHRLSTIKGADLIAVVKNGVITEKGNHETLINKGGHYASIVDSNH* 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2573 1296 Gene3D - 397 657 IPR027417 -
Mtr3g2573 1296 SMART AAA_5 426 619 IPR003593 -
Mtr3g2573 1296 SMART AAA_5 1084 1277 IPR003593 -
Mtr3g2573 1296 ProSitePatterns ABC transporters family signature. 1197 1211 IPR017871 GO:0005524
Mtr3g2573 1296 Gene3D ABC transporter type 1, transmembrane domain 121 1030 IPR036640 GO:0005524|GO:0016021
Mtr3g2573 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1047 1294 IPR027417 -
Mtr3g2573 1296 Gene3D - 1047 1296 IPR027417 -
Mtr3g2573 1296 SUPERFAMILY ABC transporter transmembrane region 62 381 IPR036640 GO:0005524|GO:0016021
Mtr3g2573 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 399 635 IPR003439 GO:0005524
Mtr3g2573 1296 CDD ABC_6TM_Pgp_ABCB1_D2_like 725 1040 - -
Mtr3g2573 1296 CDD ABC_6TM_Pgp_ABCB1_D1_like 75 372 - -
Mtr3g2573 1296 Pfam ABC transporter transmembrane region 735 1007 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g2573 1296 Pfam ABC transporter transmembrane region 75 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g2573 1296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 637 IPR027417 -
Mtr3g2573 1296 PANTHER - 25 1292 - -
Mtr3g2573 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 76 364 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g2573 1296 CDD ABC_MTABC3_MDL1_MDL2 1057 1292 - -
Mtr3g2573 1296 CDD ABC_MTABC3_MDL1_MDL2 399 637 - -
Mtr3g2573 1296 ProSitePatterns ABC transporters family signature. 538 552 IPR017871 GO:0005524
Mtr3g2573 1296 Pfam ABC transporter 418 566 IPR003439 GO:0005524
Mtr3g2573 1296 Pfam ABC transporter 1078 1225 IPR003439 GO:0005524
Mtr3g2573 1296 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 25 1292 - -
Mtr3g2573 1296 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 736 1022 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr3g2573 1296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1057 1294 IPR003439 GO:0005524
Mtr3g2573 1296 SUPERFAMILY ABC transporter transmembrane region 717 1042 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2573 Mtr-Chr3 39748252 39754049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2573 60 638 Calmodulin-binding Proteins AT2G36910 35.788 2.12e-109 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2573 K05658 - gmx:100800293 1754.95