Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr3g2571 | ATGGATGTAATTTTTGAAGTGCAAAGAGGAAGACCATTCTCAATTGAAGTAGGCTTCTTCGACACAATTTTGGAAATCAAAGAAAAAATTCAAAAGTATCAAGGAATTCCAATCTCCAAACAAACCTTAATCTTCAATGGCCAAATTCTCCCAGAAGATGGTGACATTTGGAAATGCGCAATTTTTCAAAACTCGCGCATTCATCTCATAGTCACCGCCTCAGAATCCGATCATCATAAACAGCCGATTGAAGACACCAAATTGCACCTCAACATCAAAACTCCTTCATCCAAACCCTACTTTCCTATTGAAATCTATAAAAACGACACCGTTTTAAAGCTTAAAGAGAAAATTCACGACATTGACCAAAATAACGTTCCATTGAACCAACTCATGTTGCATGCAGCCGATACCGAATTGCATGACAATCAATTGATACGTGATTGTGATGTTTCGGATAAAAGTGAAATCGAGGTGAGTTTTAAGCCACCAGCGGGGCCAGCGGTTTCACCAACAATGGTTGGTGGTGGAGGTTCAAAGAAGTTGAAGTTTATGGTTTTATCAAAGAGTGGAACAAAGAAAATTCCTGTGGAGATGAATGCTACTGATAATGTTGGAGAATTGAGGAAAGAGCTTCAAAAGATGAATCAAAGGCTTCAATTTCATCTTCCACAAGAAGGTTATTTTTTCATCTTTAAGCAAAATGTTATGGATGATGAGAAATCTTTTCGATGGCACCATGTTTGTCAAGGTGACACCATTGAAATCTTTAATGGAAGTGTCACCGGTGGATCATGA | 798 | 0.381 | MDVIFEVQRGRPFSIEVGFFDTILEIKEKIQKYQGIPISKQTLIFNGQILPEDGDIWKCAIFQNSRIHLIVTASESDHHKQPIEDTKLHLNIKTPSSKPYFPIEIYKNDTVLKLKEKIHDIDQNNVPLNQLMLHAADTELHDNQLIRDCDVSDKSEIEVSFKPPAGPAVSPTMVGGGGSKKLKFMVLSKSGTKKIPVEMNATDNVGELRKELQKMNQRLQFHLPQEGYFFIFKQNVMDDEKSFRWHHVCQGDTIEIFNGSVTGGS* | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr3g2571 | 265 | Gene3D | - | 1 | 70 | - | - | |
| Mtr3g2571 | 265 | Coils | Coil | 198 | 218 | - | - | |
| Mtr3g2571 | 265 | ProSiteProfiles | Ubiquitin domain profile. | 182 | 263 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | PANTHER | UV EXCISION REPAIR PROTEIN RAD23 | 1 | 264 | - | - | |
| Mtr3g2571 | 265 | CDD | Ubl_ubiquitin_like | 193 | 257 | - | - | |
| Mtr3g2571 | 265 | ProSiteProfiles | Ubiquitin domain profile. | 88 | 166 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | PANTHER | UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED | 1 | 264 | - | - | |
| Mtr3g2571 | 265 | SUPERFAMILY | Ubiquitin-like | 1 | 81 | IPR029071 | - | |
| Mtr3g2571 | 265 | Gene3D | - | 182 | 258 | - | - | |
| Mtr3g2571 | 265 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Mtr3g2571 | 265 | Gene3D | - | 72 | 168 | - | - | |
| Mtr3g2571 | 265 | SUPERFAMILY | Ubiquitin-like | 178 | 257 | IPR029071 | - | |
| Mtr3g2571 | 265 | CDD | Ubl_ubiquitin_like | 90 | 159 | - | - | |
| Mtr3g2571 | 265 | Pfam | Ubiquitin family | 6 | 72 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | Pfam | Ubiquitin family | 90 | 163 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | SMART | ubq_7 | 88 | 162 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Mtr3g2571 | 265 | SUPERFAMILY | Ubiquitin-like | 86 | 170 | IPR029071 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr3g2571 | Mtr-Chr3 | 39731025 | 39732176 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr3g2571 | 1 | 71 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 33.803 | 6.19e-06 | 43.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr3g2571 | - | - | lang:109360845 | 363.614 |