Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2569 ATGAAAGGAACTAGATTGATATCGTTGTTCTCCAAGCAGCATCTACGTCCTTCTTCTCATCCTCAATTCCGATTCTTCAACTCTTCTTCTTCATCAGCTTCCTCAAACAAGCTCTTCGTTGGAGGATTATCATGGTCTGTAGATGAAAAATCCCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGATAGTGGTAGAGCTAGAGGCTTTGGATTTGTTATCTTTTCAAATGAAGATGCTGCAAAATCTGCTAAAGATGCAATGGATGGAAAGGCATTGTTGGGTAGACCATTGAGGATAAATTTTGCTCTCGAGAAGCCCCGTGGTATACCTGTAGTTGTTCCTCGATTTACAGATAACGGACACTTCAACAAGCACTAA 408 0.4044 MKGTRLISLFSKQHLRPSSHPQFRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFNKH* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2569 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Mtr3g2569 135 SMART rrm1_1 37 110 IPR000504 GO:0003723
Mtr3g2569 135 Gene3D - 11 118 IPR012677 -
Mtr3g2569 135 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 12 134 - -
Mtr3g2569 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Mtr3g2569 135 SUPERFAMILY RNA-binding domain, RBD 21 118 IPR035979 GO:0003676
Mtr3g2569 135 PANTHER TRANSFORMER-2-RELATED 12 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2569 Mtr-Chr3 39718178 39719423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2569 2 116 C2H2 Transcription Factor Family AT2G19380 33.043 3.24e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2569 - - gmx:100810104 184.496