Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2567 ATGAAGAGGTTCAATAACTCAGAAACTATGGCTTCTTTGCTTTCCATGTACCAATCCAAAGAGGTAGATGTGGATCAAAGGAATGAGGCAAAAGGTTACAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGCTATGAAGATGGTAGTCCAATGTTGGAGAAGAAAAGAAGACTTGGTTATGATCAAGTAAAAGCTTTAGAAAAGAGTTTTGAATTGGACAACAAGCTAGAGCCAGAGAGAAAAGTGAAGTTAGCTGAAGATTTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCACGAACGAAAACCAAACAATTGGAAAGAGATTATAGTGTTCTTAAGTCCAATTTTGATGTTCTTAAGGTTGAGTATACTAATCTTCAACAAGAGAATGAGACTCTAACTAGAAAGTTAAGAGAGTTGAAAGCGAAATTGTTACGAGTTGAAAGCAATGAGTTAGAGAAAGAAGTAGAATGTCCAATTTCAAGAGGTATAGAAAGAGGAGGTTCAGAAAGTAATTCAAGTGGTATAATTAAGGAAGAAAGTAATGTTGATTCTCCTATGTGTTTCAATGGTTCTTTGCCAAGTTCAATGATAAATTTGGTTCATTATTATGATTCAAGAGGTTCTCAAGAGAATGTGTTTCAGAATCAATTTATGAGAATGGAGGAGCAGAATTTCTTAAGTAATAGTGAATTATTCAGTTTCTTTTCAGTTGATCAATCCCCTACTTTGTAA 768 0.3451 MKRFNNSETMASLLSMYQSKEVDVDQRNEAKGYSEEFQAMLDRLEQEDSYEDGSPMLEKKRRLGYDQVKALEKSFELDNKLEPERKVKLAEDLGLQPRQVSIWFQNRRARTKTKQLERDYSVLKSNFDVLKVEYTNLQQENETLTRKLRELKAKLLRVESNELEKEVECPISRGIERGGSESNSSGIIKEESNVDSPMCFNGSLPSSMINLVHYYDSRGSQENVFQNQFMRMEEQNFLSNSELFSFFSVDQSPTL* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2567 255 CDD homeodomain 59 115 IPR001356 GO:0003677
Mtr3g2567 255 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Mtr3g2567 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 240 IPR045224 GO:0003700
Mtr3g2567 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 5 240 - -
Mtr3g2567 255 SMART HOX_1 57 118 IPR001356 GO:0003677
Mtr3g2567 255 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Mtr3g2567 255 Coils Coil 27 47 - -
Mtr3g2567 255 Gene3D - 64 112 - -
Mtr3g2567 255 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Mtr3g2567 255 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Mtr3g2567 255 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Mtr3g2567 255 Pfam Homeodomain 60 112 IPR001356 GO:0003677
Mtr3g2567 255 SUPERFAMILY Homeodomain-like 59 125 IPR009057 -
Mtr3g2567 255 Coils Coil 106 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2567 Mtr-Chr3 39694485 39695895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2567 36 155 Homeobox Transcription Factor Family AT5G65310 64.567 5.44e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr3g2567 Homeodomain 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2567 K09338 - zju:107420758 236.498