LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g2555	ATGATGGCTTACAATCTGAAACAAAAACTGTTCTCAATTACTCTTCTGTTCTGCATAATTTTTTCACCAACTGAAACAGCATCAACATTCAGCCATTACAATTGCACAACCATAAAAAAGTTTAGTCCAAAAAGCATTTACCAAACCAATCTAACCACACTCTTATCAACACTTTCATCCAAAGCACTCAACCATGGCTACTACAACACTAGTATTAGTACAATCGATGAAAAAGAAGACACTATCTATGGTCTCTTCATGTGTATAGGATACACAAGTAACTGTGGAGAATGTGTTCAAAACTCTACCAAAATACTTACCTCAATGTGTAACTTAAATAAAGAAGCTATAATTTGGTCTGATGAATGCTTGGTGCGTTATTCTGATCGATCTTTCTTTGGCACTTTGGAAGAATCTCCATCATGGTGTGTGAAGGGCTCAATGGATTATGAAGGTCCATTGAAAGGATTCAACAAAATGCTAAATTCTTTGATGCTGGATCTTGTAACTCAAGCAATTTCTTTGTTGAAGAAGCCTGTAACTCAAGCTATTAAAACTTCAACGGGAAATTCTATCAAATTTGTTCTCAAGAGAGCAATTTTCTTTGAGGACAAATTCTTGTATGGCCTTGCTCAATGCATACCAAATCTCTCTAATGATAATTGCATGAAGTGTTTAAATGATGCTATAAATTATCTGCAAACCTCGTGTGCTAAAGGAAAGATTAGAGGAAGTGTTTTATATCCAAGTTGTGTTGTTAGATATGATCCTTATCCATATTTCGAACAACCAATAGTAAAAAGCGAGGAAAATGAAGTACAATCATTTAAAATATTTTTTCACGTTCTTGCTCCTGTCATGATTTGCTCGGTTGCGGGTTTCTTTTTCGTGTATTATCTGAGACGTAGGAGAGCGAGGAAGAATCTCATGTACCACAGAGAAAATTTTGGGGAAGAGATTACATCAGAAGTGAACTCTCTGCAATTTGATTTCGATATGATTCGACTAGCAACAAACAAGTTCTCTGAAGATAACAAGATCGGAGAAGGTGGTTTTGGAGATGTTTACAAGGGAATGTTTCCTAATGGATATGAAATAGCGGTAAAGAGGCTCATAAGAAATTCGAGTCAAGGAGCTGTGGAATTTAAGAATGAGGTATTGTTAATAGCCAAGCTTCAACACAGAAATCTTGTGAGATTGTTAGGATTTTGCATTCAAAGGAATGAGAAGATACTCATTTATGAATATATGCACAACAAAAGCCTTGATTATTACCTATTCAGTCCTGAGAACCATAGAAAATTAACTTGGCATGCACGCTACAAGATTATAAGAGGGATTGCACGAGGTATTCTTTATCTACATGAGGATTCTCATCTAAAAATCATACACTGTGATCTTAAACCCAGCAACATTTTGTTGGATGACAAAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATTGTTGCCATTGATCAAATGCAAGGAAACACTAGTATAATTGCTGGAACATATGGCTACATGTCTCCTGAATATGCAATGCTCGGCCAGTTTTCTGTTAAATCCGATGTATTCAGCTTTGGAGTCATAATGCTTGAGATTGTTAGTGGAAAAAGAAACGTTGATTATAATGGAGTAAACTCCATTGATGACCTCGTGAGCCATGCATGGAAAAAATGGACTGAAAATAAGCAAATGGAATTATTGGATCCTGCATTGACATACTCATTTTCAGAAACAGAAGTCAGTCGGTGCATACAGCTTGGTCTACTATGTGTGCAAGAAAATCCAGATCAGAGGCCTACTATGGCAACAATTGCTTTGTATTTCAACATTGATTCAATTGATTTGCCACTACCTCAACAGCCACCATTTTACATGCGTGGTAAAATAGAATCAAAGGTGGCTAGTAAAAAAACAATGTCAGGTCGACCAAGGAGTTATTCAGTGACAAGGTTTTAA	1968	0.3623	MMAYNLKQKLFSITLLFCIIFSPTETASTFSHYNCTTIKKFSPKSIYQTNLTTLLSTLSSKALNHGYYNTSISTIDEKEDTIYGLFMCIGYTSNCGECVQNSTKILTSMCNLNKEAIIWSDECLVRYSDRSFFGTLEESPSWCVKGSMDYEGPLKGFNKMLNSLMLDLVTQAISLLKKPVTQAIKTSTGNSIKFVLKRAIFFEDKFLYGLAQCIPNLSNDNCMKCLNDAINYLQTSCAKGKIRGSVLYPSCVVRYDPYPYFEQPIVKSEENEVQSFKIFFHVLAPVMICSVAGFFFVYYLRRRRARKNLMYHRENFGEEITSEVNSLQFDFDMIRLATNKFSEDNKIGEGGFGDVYKGMFPNGYEIAVKRLIRNSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCIQRNEKILIYEYMHNKSLDYYLFSPENHRKLTWHARYKIIRGIARGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVAIDQMQGNTSIIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIMLEIVSGKRNVDYNGVNSIDDLVSHAWKKWTENKQMELLDPALTYSFSETEVSRCIQLGLLCVQENPDQRPTMATIALYFNIDSIDLPLPQQPPFYMRGKIESKVASKKTMSGRPRSYSVTRF*	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g2555	655	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Mtr3g2555	655	Gene3D	Transferase(Phosphotransferase) domain 1	417	616	-	-
	Mtr3g2555	655	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	272	635	-	-
	Mtr3g2555	655	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	29	265	-	-
	Mtr3g2555	655	SUPERFAMILY	Protein kinase-like (PK-like)	326	629	IPR011009	-
	Mtr3g2555	655	SMART	serkin_6	341	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g2555	655	Gene3D	Phosphorylase Kinase; domain 1	303	416	-	-
	Mtr3g2555	655	ProSiteProfiles	Gnk2-homologous domain profile.	138	260	IPR002902	-
	Mtr3g2555	655	Pfam	Protein tyrosine and serine/threonine kinase	344	609	IPR001245	GO:0004672\|GO:0006468
	Mtr3g2555	655	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Mtr3g2555	655	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	272	635	-	-
	Mtr3g2555	655	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	29	265	-	-
	Mtr3g2555	655	CDD	STKc_IRAK	347	609	-	-
	Mtr3g2555	655	ProSiteProfiles	Protein kinase domain profile.	341	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mtr3g2555	655	Gene3D	-	27	132	IPR038408	-
	Mtr3g2555	655	Gene3D	-	143	260	IPR038408	-
	Mtr3g2555	655	Pfam	Salt stress response/antifungal	153	256	IPR002902	-
	Mtr3g2555	655	Pfam	Salt stress response/antifungal	35	129	IPR002902	-
	Mtr3g2555	655	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g2555	Mtr-Chr3	39530144	39533284	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g2555	10	636	Receptor kinase-like Gene Family	AT4G05200	41.628	1.33e-171	504

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Mtr3g2555		PK_Tyr_Ser-Thr	7.3e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g2555	-		-	mtr:MTR_3g079850	1316.6