Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2549 ATGGCCATGCAACTAAGTATGGATTCTTCTTCTTCGTTTGCGAGGGTGGTGGTGACTCCAAAAGAGTTTGACGTTTTTATTAGCTTTTGTGGTGAGGATACTGGTAGAAAGTTCACAAGCCATCTTTATGAAGCTCTGAGCAAGAAAATTATAACATTTATAGATGACAATGAGCTTGAAAAAGGAGACGAGATCTCGTCAGCACTGATCAAAGCTATTGAAGATTCGTCTGCATCTATCGTCATCTTCTCAAAAGACTACGCTTCCTCAAAATGGTGCTTGAATGAACTCGTCAAGATTCTAGAATGTAAGAAAGATCAGGGACAGATTGTGATACCGATTTTCTACGAAATAGATCCATCACATGTGAGGAATCAAAATGGAAGTTATGGGCAAGCCTTTGCAAAACATGCACGAGATTTGAAGCAGAACAAAGAAATGTTAAAGAAATGGAAAGATGCTCTAACTGAAGCAGCCAATTTAGCAGGGTGGCACTCTCAAAATTACAGGATTGAATCAAATTTCATTAAGGACATTGTTGAAGATGTTTTGAAAAAATTGAATCGGAGATACCCATTTGAAGTTAATATGCAACTTGTTGGAATTGAGAAAAAGTATGAAGAGACTGAATCATTACTGAAAATTTTGTCAAATGATGTTAGATCACTTGGATTATGGGGAATGGGCGGTATAGGAAAGACCACTCTAGCTAAAGATTTATATGCTAAATTGTGTTCTCAATTTGAACGCCATTGCTTCCTAGAAAATGTAAGGGAAGAATCAACCGGGCATGGACTCAATGGTTCAAGAAACAAACTCTTTTCTACATTGTTGGGGATTCCTCGTGATGCACCTTATGTAGAAACCCCAATTTTTAGAAGAAGACTTGCATGTGAAAAAAGTTTGACTGTGTTGGATGATGTGACAACCTTAGAGCAAGTGGAAATTCTTAACATAGATAATATTTGTTTGGGACCGGGTAGTAGAATCATTGTCACAACTAGAGATAAGCAGATATGTAACCAATTTAATGAATGTGCAATATATGAGGTCGAGGGATTGAACGAAGATGAATCTCTTGAGGTATTCTGTTTGGAGGCTTTCAGAGAAAAATATCCAAAAATTGGGTATAGGGGTCTATCAAAAAGAGCAATTGGCTATTGCGGAGGCAATCCCCTGGCTTTAAAAGTTTTAGGTGCAAATTTCCGTACAAAAAGCAAAGAAGCATGGGAAAGTGAATTGGAAAAGCTCAAAAAGATTCCTAATGGGAGAATTCATGATGTGCTAAAATTGAGTTTCGATGACTTAGATCGTACTCAACAGGAGATATTTTTAGACATTGCATGCTTCTTCAACTTGGAATTACATGCCTGTTTTGGACGAGATGAAATAACAACTCTATTGAATGCTTGCAATTTTTTTGCCGTAAGTGGGATAGAAGTCCTTCTATATAAAGCACTCTTAACTATTGAACATTATGATCAAGTTACAATGCATGATTTGTTAGTAGAAATGGGAAGAGAGATTGTTAGGAAAGAATCTCTTAAAGACCCCGGAAGTAGAAGTCGATTGTGGGATCCTAAGGAAGTGTATGATTTATTGAAATATAACAAGGGAACTGAAGTTGTTGAAGTTATATTTTTCGATATTTGTGACTTTGGGGATCTATACTTGAGCTCTGCTTCATTTAAAAGCATGACCAACTTAAGATATCTTCATATCCTTAATAGTTTACATAATATATTTCTGACAAATGGAAGAAATGAAGGATCCATTGTGCACCTTCATGAAGGTCTTGAGTGGTTGTCTGATAAATTGAGGTACCTTAAATGGGAATCATTCCCACTTAATTCTTTGCCAGCAAGCTTCTGTGCTGAAAATCTTGTACAACTTAGCATGACCAATAGCAAACTTAAAAAGCTATGGGATGGAATTCAGAAACTAGACAATTTGATGAAAATTGAGCTTGATTATTCCAAAGACCTGGTTGAGATACCAGACTTATCTAGGGCGCCAAATCTTGAACTAGTATCTCTTTCCTATTGTGAGAATCTCTGTAAACTCCATGAATCCATTTTGACTGCCCCCAAGCTTAGTTATCTACGTTTAGACGGCTGCAAAAAGATTAAAAGCCTGAAAACCAACATTCATTCAAAATCTCTTGAATCACTCAGTCTCAATAATTGTTCATCTCTTGTGGAATTTTCTGTGACATCAGAAAATATGACTGGGTTGTATTTATCTTGTACCGCTATACAAGAATTACCCTCATCCATGTGGCGTAATAGAAAACTGACTCATCTCAATCTAAGTAAATGTAAGAAGCTTAACATTGCTGAGAAGAATTTACCAAACGATCCAGGATTGGAGTCTCTTATATTTTGTGACCTGTCAGGATGCACTCAAATCAACACATGGAATCTGTGGTTCATATTTCATTTCATACGATCTGTAAAACACCTAAGGATGGTAAACTGCTGCAACTTAGAAAGTCTCCCTGACAACATCCAAAACATTTCAATGTTGGAATGGCTTTGTTTAGATGAATGCCGGAAACTCAAATTCATACCAAAGCTTCCTGTATCCTTGCGAAACTTGAGTGCTGCTAACTGCATTTACGTGGACACTGGATCTGTTCAACGATCAATGCTTGAGAACATGATACAGAGACACCTCACCAACTTCAGGGATAGATCAAATTGTTTTCAGGAGTTTTTTTTCCTTCCCGGTGACCAAATTCCGTGCGAGTTTTATTTTCAATCAACAGAGGCCTCGATAGTTATTCCTCCTATTCCAAAATCTGATTTGTGTTGTTTAATTTTTTGCATCATTTTCTCTGAGGGCTTAACTTTTTTCTACAACAACCTTTGTTGTACTATCTATCAACACAAAAAAGAAGTCCACCAATGGGATACAAATTGGGGGAATGAACGTACACTATTTTCAGATCATGTATTGATAATTTGTTGGTGTCATTATAACAAATTGGTTGAGTTGGGGAGTGAAAGAGGAAGTGATGATTACAACCTTACATTTGAATTCAAATTGAAAGAATATGTTGATGACGAGGAACAATGGTCAACTATTGAGGGGATAAAGGGTTGTGGGGTCTTCCCTGTATATGACTTAGGGCTGGATGGTAGTAGCAGCAGTAGATTTGAAACTGTTGAAATCGAATCCGGTGTTCAAATCTCTGATGAGTCTGATCAACATTCAAACTTTGATATTGATGAGCTGCAACACCATGCAACTGAAGCTGAAGTCGGAAAAGATTGTGGGTTCTTCCTTGAATATGACTTGGAACTTAGGTTCGGGCTGCGAGATGACCAACAATAA 3336 0.3717 MAMQLSMDSSSSFARVVVTPKEFDVFISFCGEDTGRKFTSHLYEALSKKIITFIDDNELEKGDEISSALIKAIEDSSASIVIFSKDYASSKWCLNELVKILECKKDQGQIVIPIFYEIDPSHVRNQNGSYGQAFAKHARDLKQNKEMLKKWKDALTEAANLAGWHSQNYRIESNFIKDIVEDVLKKLNRRYPFEVNMQLVGIEKKYEETESLLKILSNDVRSLGLWGMGGIGKTTLAKDLYAKLCSQFERHCFLENVREESTGHGLNGSRNKLFSTLLGIPRDAPYVETPIFRRRLACEKSLTVLDDVTTLEQVEILNIDNICLGPGSRIIVTTRDKQICNQFNECAIYEVEGLNEDESLEVFCLEAFREKYPKIGYRGLSKRAIGYCGGNPLALKVLGANFRTKSKEAWESELEKLKKIPNGRIHDVLKLSFDDLDRTQQEIFLDIACFFNLELHACFGRDEITTLLNACNFFAVSGIEVLLYKALLTIEHYDQVTMHDLLVEMGREIVRKESLKDPGSRSRLWDPKEVYDLLKYNKGTEVVEVIFFDICDFGDLYLSSASFKSMTNLRYLHILNSLHNIFLTNGRNEGSIVHLHEGLEWLSDKLRYLKWESFPLNSLPASFCAENLVQLSMTNSKLKKLWDGIQKLDNLMKIELDYSKDLVEIPDLSRAPNLELVSLSYCENLCKLHESILTAPKLSYLRLDGCKKIKSLKTNIHSKSLESLSLNNCSSLVEFSVTSENMTGLYLSCTAIQELPSSMWRNRKLTHLNLSKCKKLNIAEKNLPNDPGLESLIFCDLSGCTQINTWNLWFIFHFIRSVKHLRMVNCCNLESLPDNIQNISMLEWLCLDECRKLKFIPKLPVSLRNLSAANCIYVDTGSVQRSMLENMIQRHLTNFRDRSNCFQEFFFLPGDQIPCEFYFQSTEASIVIPPIPKSDLCCLIFCIIFSEGLTFFYNNLCCTIYQHKKEVHQWDTNWGNERTLFSDHVLIICWCHYNKLVELGSERGSDDYNLTFEFKLKEYVDDEEQWSTIEGIKGCGVFPVYDLGLDGSSSSRFETVEIESGVQISDESDQHSNFDIDELQHHATEAEVGKDCGFFLEYDLELRFGLRDDQQ* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2549 1111 Gene3D - 20 188 IPR035897 -
Mtr3g2549 1111 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Mtr3g2549 1111 SMART till_3 22 161 IPR000157 GO:0007165
Mtr3g2549 1111 Coils Coil 199 219 - -
Mtr3g2549 1111 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 1088 IPR044974 GO:0006952
Mtr3g2549 1111 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 164 IPR035897 -
Mtr3g2549 1111 SUPERFAMILY L domain-like 548 876 - -
Mtr3g2549 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 447 IPR027417 -
Mtr3g2549 1111 Gene3D - 189 349 IPR027417 -
Mtr3g2549 1111 Gene3D Ribonuclease Inhibitor 549 718 IPR032675 -
Mtr3g2549 1111 Gene3D Ribonuclease Inhibitor 719 882 IPR032675 -
Mtr3g2549 1111 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 1088 - -
Mtr3g2549 1111 SUPERFAMILY "Winged helix" DNA-binding domain 424 535 IPR036390 -
Mtr3g2549 1111 Gene3D - 353 437 IPR042197 -
Mtr3g2549 1111 Pfam Leucine Rich Repeat 627 646 IPR011713 -
Mtr3g2549 1111 Pfam TIR domain 23 192 IPR000157 GO:0007165
Mtr3g2549 1111 Pfam NB-ARC domain 211 423 IPR002182 GO:0043531
Mtr3g2549 1111 PRINTS Disease resistance protein signature 222 237 - -
Mtr3g2549 1111 PRINTS Disease resistance protein signature 295 309 - -
Mtr3g2549 1111 PRINTS Disease resistance protein signature 388 402 - -
Mtr3g2549 1111 PRINTS Disease resistance protein signature 716 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2549 Mtr-Chr3 39464554 39469416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2549 21 876 WRKY Transcription Factor Family AT4G12020 32.346 2.56e-98 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2549 - - mtr:MTR_2g037140 1211.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2549 3 39464554 39469416 Mtr3g2549 3 39464554 39469416 ECH