Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2542 ATGGAGAAGGTTTCTCTTTATGCTTGTTTAATACTCAACTTGAGTTTATTGGTTATTTTTCCATATAGCAAAGCTAGTCAAGCTGATAAACTCAATGAGTTTATTCTGTCTAGAAAATCTCAGAATCCTCCCAAGACTCTTTCTTGGGAAGAGGGAGATGCATTGAAAACACTTTTTTCTTCGGCTGCTTATGTTGCACCACCTCAAGAGGAGCTAAGACTAGCTGACAAGATCGTCACATTGCCTGGTCAACCCTATGGAGTGAATTTTGACCAATATTCAGGCTATGTCACAGTTGATCCTGAGACTGGAAGAGAACTTTTCTATTATTTTGTGGAGTCTCCATGTAACTCTTCTACTAAACCTTTAGTATTATGGCTCAATGGAGGACCTGGCTGTTCTTCACTTGGGTATGGAGCCTTTCAGGAGCTCGGACCCTTCAGAGTCAACTCTGATGGAAAAACACTATACCGTAACCCATATGCTTGGAATGAAGTGGCGAACGTACTCTTCTTGGAATCTCCAGCAGGAATAGGATTTTCCTACTCAAACACAACATCTGACTATGACAAATCAGGAGATAAATCAACTGCCAAGGATTCCTATGTCTTCCTTATCAACTGGCTGGAGAGATTTCCACAGTACAAAACAAGAGATTTTTACATAAGTGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCCACTATTCTACACAACAATAAACTCTATAAGAACACCATTATTAACCTCAAAGGCATTTCTTTAGGGAATGCTTGGATTGATGATGCTACAAGTTTAAAGGGGTTATATGATAACTTGTGGACTCATGCTTTGAACTCGGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTAAACAAAATTATTCAGCAATTTGTACCAATGCAATGAATATGTCCATGATTGAGAAAGGAAAGATAGACTCCTTTAACATCTATGCTCCATTATGTCACGACTCTACTCTGAAAAATGGTTCAACTGGTTATGTAAGTAATGATCTTGACCCTTGTTCTGATTACTATGGCACTGCCTATCTAAATAGACCAGAGGTCCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGCCATTGCAGTGATAGTATTAATCTTAATTGGAAAGACAGTCCAATTACCATCCTACCCACCATCAAGTATCTCATCGATAATGGCATTAAATTATGGATATACAGTGGTGATACAGATGCAGTGGGAGTCACAATTTCAAGATATCCAATCAACACCCTTAAGCTCCCTATCGACTCTACTTGGCGTCCATGGTATTCTGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTAACATTTGTTACAGTGAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCTGAACGTGCTTTGACTTTGATCTCATCATTCCTCTATGGAATCCTGCCTGCTTCTGTTTCACCATCATATATACAAAACCAACTTAAGAACAAGATGAAGAAAATTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTCTCTTGGTTATTTTTCCTTATAGCAAAGCTAGTCAAGCTGATAAACTTGATGAGCTTTTTCTGTCTAGAAAATCACAGAATCCTCCCAAGACTCTTTCTTGGGAAGAGGGAGAAGCATTGAAAACACTTTCTTCTTCTGCTGCTTATGTTGCAGCACCTCAAGAGGAGCTAAGACTAGCTGACAAGATCGTCACATTGCCTGGTCAACCCGATGGTGTAGATTTTGACCAATACTCTGGTTATGTGACTGTTGAACCTGAGGCCGGAAGAGCACTTTTTTATTATTTTGTGGAGTCTCCATATAACTCTTCAACTAAACCATTAGTATTGTGGCTCAATGGAGGACCTGGCTGTTCTTCACTTGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTCAACTCTGATGGAAAAACATTATACCGTAACCAATATGCTTGGAGTGAAGTTGCAAATATACTCTTCTTAGAGTCTCCAGCAGGAGTGGGATTTTCCTACTCAAACACAACTTCTGACTATAAAAAAGCAGGAGATAAGTCCACTGCTAAAGATGCCTATGTTTTCCTAATCAACTGGCTGGAGAGATTTCCACAGTACAAAACCAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTTGCATCCACTATTCTTCACCACCATAAACTCTATAACAAAACCATCATTAACCTCAAAGGCATATCTATAGGGAATGCTTGGATTGATGATGCTACAGGTGACAAGGGGTTATTTGATTACTTCTGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTAAACAAAATTATTCAACAATTTGTATCAATGTAACAGATTGGGCCTTCATTGAGAAAGGAAAGATAGACTTCTATAACATCTATGCGCCATTGTGTCATGACTCTTCTCTGAAAAATGGTTCAACTGGTTATGTAACTAATGATTTTGACCCTTGTTCTGATAACTATGGTATTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGAGCCATTGCGGTGATCTTATTACTCACTGGAATGACAGTCCAATTACCATCCTACCCACCATCAAGTATCTCATTGAAAGCAACATTAAATTATGGATATACAGGCAAGTTCAATTTCATTATTATGATGTGTTTTCCTACAGTGGTGATACAGATGCAAGGGTTCCAGTCACAACTTCAAGATATGCAATCAACACCCTTAAGCTTCCTATCAACGCTTCCTGGCGTCCATGGTATTCTGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTGACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAGCCAGAAAGGGCATTGACAATGATATCATCATTCCTCTATGGAAGTCTGCTTCCTACTTCACCATCAAAATAA 3033 0.394 MEKVSLYACLILNLSLLVIFPYSKASQADKLNEFILSRKSQNPPKTLSWEEGDALKTLFSSAAYVAPPQEELRLADKIVTLPGQPYGVNFDQYSGYVTVDPETGRELFYYFVESPCNSSTKPLVLWLNGGPGCSSLGYGAFQELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGIGFSYSNTTSDYDKSGDKSTAKDSYVFLINWLERFPQYKTRDFYISGESYAGHYVPQLASTILHNNKLYKNTIINLKGISLGNAWIDDATSLKGLYDNLWTHALNSDQTHELIEKYCDFTKQNYSAICTNAMNMSMIEKGKIDSFNIYAPLCHDSTLKNGSTGYVSNDLDPCSDYYGTAYLNRPEVQKALHAKPTNWSHCSDSINLNWKDSPITILPTIKYLIDNGIKLWIYSGDTDAVGVTISRYPINTLKLPIDSTWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFLYGILPASVSPSYIQNQLKNKMKKISLYACLLLNLSLLVIFPYSKASQADKLDELFLSRKSQNPPKTLSWEEGEALKTLSSSAAYVAAPQEELRLADKIVTLPGQPDGVDFDQYSGYVTVEPEAGRALFYYFVESPYNSSTKPLVLWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNQYAWSEVANILFLESPAGVGFSYSNTTSDYKKAGDKSTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILHHHKLYNKTIINLKGISIGNAWIDDATGDKGLFDYFWTHALNSDQTHELIEKYCDFTKQNYSTICINVTDWAFIEKGKIDFYNIYAPLCHDSSLKNGSTGYVTNDFDPCSDNYGIAYLNRPEVQKALHAKPTNWSHCGDLITHWNDSPITILPTIKYLIESNIKLWIYRQVQFHYYDVFSYSGDTDARVPVTTSRYAINTLKLPINASWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTMISSFLYGSLLPTSPSK* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2542 1010 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Mtr3g2542 1010 Gene3D alpha/beta hydrolase 73 331 IPR029058 -
Mtr3g2542 1010 Gene3D alpha/beta hydrolase 576 834 IPR029058 -
Mtr3g2542 1010 Gene3D - 392 485 - -
Mtr3g2542 1010 Gene3D - 894 1001 - -
Mtr3g2542 1010 PANTHER CARBOXYPEPTIDASE 19 490 - -
Mtr3g2542 1010 PANTHER CARBOXYPEPTIDASE 522 1006 - -
Mtr3g2542 1010 ProSitePatterns Serine carboxypeptidases, histidine active site. 971 988 IPR033124 GO:0004185
Mtr3g2542 1010 ProSitePatterns Serine carboxypeptidases, histidine active site. 455 472 IPR033124 GO:0004185
Mtr3g2542 1010 SUPERFAMILY alpha/beta-Hydrolases 579 1005 IPR029058 -
Mtr3g2542 1010 Gene3D - 349 382 - -
Mtr3g2542 1010 Gene3D - 852 885 - -
Mtr3g2542 1010 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 522 1006 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 490 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 Pfam Serine carboxypeptidase 585 999 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 Pfam Serine carboxypeptidase 82 483 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 ProSitePatterns Serine carboxypeptidases, serine active site. 725 732 IPR018202 GO:0004185
Mtr3g2542 1010 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 PRINTS Carboxypeptidase C serine protease (S10) family signature 711 736 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 PRINTS Carboxypeptidase C serine protease (S10) family signature 971 984 IPR001563 GO:0004185|GO:0006508
Mtr3g2542 1010 SUPERFAMILY alpha/beta-Hydrolases 76 487 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2542 Mtr-Chr3 39397130 39405831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2542 350 485 Calmodulin-binding Proteins AT2G22960 28.671 2.88e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2542 - K16297 pdul:117618819 1151.35