Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2540 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGCCTTTTGGTTATTTTTCCATATAGCAAAGCTAGTCAAGCTGATAAACTCAATGAGTTTATTCTGTCTAGAAAATCTCAGAATCCTCCCAAGACACTTTCTTGGGAAGAGGGAGATGCATTGAAAACACATTCTTTTTCTGCTGCTTATGTTGCACCACCTCAAGAGGAGCTAAGACTAGCTGACAAGATCGTCACATTGCCTGGTCAACCCTATGGAGTGAATTTTGACCAATATTCAGGCTATGTCACAGTTGATCCTGAGGCTGGAAGAGAACTTTTCTATTATTTTGTGGAATCTCCACATAACTCTTATACTAAACCCTTAATATTGTGGCTTAATGGAGGACCTGGTTGTTCCTCACTGGGATATGGAGCCTTTGAGGAGCTCGGACCCTTCAGAGTCAACTCTGATGGCAAAACATTATACCGTAACCCATATGCTTGGAATGAAGTGGCAAATGTACTCTTCTTGGAATCTCCAGCAGGGGTAGGATTTTCCTACTCAAACACATCATCGGACTATGACAATTCAGGAGATAAGTCCACTGCTAAAGATGCCTATGTCTTCCTAATCAACTGGCTGGAGAGATTTCCACAGTACAAAACCAGAGATTTTTACATAACTGGAGAGAGTTATGCCGGTCATTATGTTCCTCAACTTGCATCCACTATTCTTTACAACAATAAACTCTATAACAACACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCGACGAATTTAAAGGGGATATATGATAACTTGTGGACTCATGCTTTAAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTAAAGAAAATGTTTCAGCAATTTGTAACAATGCAACTGATAAGGCCTTCGTTGAGACAGGAAAGATAGACATCTATAACATCCATGCGCCATTGTGTCATGACTCTTCTCTGAAAAATGGTTCTAGTACTGGTTACGTAAGCAATGATTTTGACCCTTGTTCTGATTACTATGTTACTGCCTATCTAAATAGACCAGAAGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGACCCATTGCACTCATCTTCTTACTACCTGGAAAGACAGTCCAGCTACCGTCCTACCCACCGTCAAGTATCTCATTGATAGCGGCATTAAATTATGGATATACAGTGGTGATACAGATGTAGTGGTTCCAACCACATCTTCAAGATATTTAATCAACACCCTTAAACTTCCAATCAACTCTGCTTGGCGTCCGTGGTATTCTGGAAAAGAGATTGGAGGGTATGTTGTGGGATACAAAGGATTGACATTTGTTACAGTGAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCTGAACGTGCTTTGACTTTGATCTCATCATTCCTCTATGGAATCCTGCCTTCTGGTTCACCGTCGAATTAA 1488 0.4026 MKKVSLYACLLLNLSLLVIFPYSKASQADKLNEFILSRKSQNPPKTLSWEEGDALKTHSFSAAYVAPPQEELRLADKIVTLPGQPYGVNFDQYSGYVTVDPEAGRELFYYFVESPHNSYTKPLILWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGVGFSYSNTSSDYDNSGDKSTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILYNNKLYNNTIINLKGISIGNAWIDDATNLKGIYDNLWTHALNSDQTHELIEKYCDFTKENVSAICNNATDKAFVETGKIDIYNIHAPLCHDSSLKNGSSTGYVSNDFDPCSDYYVTAYLNRPEVQKALHAKPTNWTHCTHLLTTWKDSPATVLPTVKYLIDSGIKLWIYSGDTDVVVPTTSSRYLINTLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFLYGILPSGSPSN* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2540 495 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Mtr3g2540 495 Gene3D - 392 486 - -
Mtr3g2540 495 PANTHER CARBOXYPEPTIDASE 19 491 - -
Mtr3g2540 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 491 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 SUPERFAMILY alpha/beta-Hydrolases 78 487 IPR029058 -
Mtr3g2540 495 Pfam Serine carboxypeptidase 82 484 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 Gene3D - 350 383 - -
Mtr3g2540 495 Gene3D alpha/beta hydrolase 73 331 IPR029058 -
Mtr3g2540 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Mtr3g2540 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2540 Mtr-Chr3 39383875 39386969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2540 358 486 Calmodulin-binding Proteins AT2G22960 26.471 2.45e-10 58.2