Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2513 ATGGCAGCAACATCAAGTGAAGGAGAAGGGAAACCTATAAGATGCAAAGCGGCGGTTGCAAGAAGACCTGGTGAGTCACTGGTGATTGAAGAGATCATGGTGGCACCACCAATGCCACGTGAAGTTCGGATCCGTATCATATGTTCCTCTATCTGCCACATCGATCTCACTTTTTCCGACATGCAGGACCCTCCTGGCTTTTTTCCAAGAATTCTGGGCCACGAGGCAATTGGGGTTGTGGAAAGTGTTGGGAAGAATGTAACTGAAGTTACAAAAGGAGATGTGGTTATTCCAATTTTTCTACCAGATTGTGGAGAGTGTATAGATTGCAAATCAACCAAGAGCAACCTTTGTACTAATTTCCCGTTCAAAGTTTCTCCTTGGATGCCTAGACATGAGAACACCAGATTCACAGACCTAAACGGAGAGATCATACATCATTTCATGTATGTTTCAAGTTTCAGCGAGTACACTGTGGTTGACATTGCCAATGTAACAAAGATTGACCCAGAAATTCCTCCCAACGGGGCGTGCCTTCTAAGTTGTGGTATCGGAGCAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGACTAGGATCTATTGGATTAGCAGTTGCTGAGGGAGCCAGACTTTGTGGAGCAACCAAGATTATAGGCGTAGATGTCAACCCAGAAAAATTTGAAGTTGGAAAGAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGAATGTGGGAGCAAACCTGTGAGTCAGGTCATCACAGAGATGACTGATGGGGGAGCAGATTATTGCTTTGAGTGTGTCGGTATGGCATCATTGGTGCAAGACGCGTATGCTTCTTGCAGAAAGGGTTGGGGAAAAACAATTGTCTTAGGACTGGACAAACCAGGATCCAGAATAAGCCTCAGCTGTAGTGAGGTCCTTCATGGTGGGAAGACAATTCAGGGAAATTTATTTGGAGGACTCAAACCTAAGTCTCATGTATCCATTCTACTCAAAAGATACATGGACAAGGAACTGCAGTTGGATGAGTTTGTCACTCATGAGGTGAGTTTTAAGGACATCAACAAAGCTTTTGATTTATTGAGAAACGGACAATGTCTTCGATGCATGATTTGGATGGATAATTGA 1161 0.4453 MAATSSEGEGKPIRCKAAVARRPGESLVIEEIMVAPPMPREVRIRIICSSICHIDLTFSDMQDPPGFFPRILGHEAIGVVESVGKNVTEVTKGDVVIPIFLPDCGECIDCKSTKSNLCTNFPFKVSPWMPRHENTRFTDLNGEIIHHFMYVSSFSEYTVVDIANVTKIDPEIPPNGACLLSCGIGAGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKFEVGKKFGLTDFVHAGECGSKPVSQVITEMTDGGADYCFECVGMASLVQDAYASCRKGWGKTIVLGLDKPGSRISLSCSEVLHGGKTIQGNLFGGLKPKSHVSILLKRYMDKELQLDEFVTHEVSFKDINKAFDLLRNGQCLRCMIWMDN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2513 386 PANTHER ALCOHOL DEHYDROGENASE 8 383 - -
Mtr3g2513 386 SUPERFAMILY GroES-like 336 383 IPR011032 -
Mtr3g2513 386 Gene3D - 18 379 - -
Mtr3g2513 386 Pfam Alcohol dehydrogenase GroES-like domain 40 167 IPR013154 -
Mtr3g2513 386 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 8 383 - -
Mtr3g2513 386 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Mtr3g2513 386 Pfam Zinc-binding dehydrogenase 211 331 IPR013149 -
Mtr3g2513 386 Gene3D - 187 327 - -
Mtr3g2513 386 SUPERFAMILY GroES-like 9 190 IPR011032 -
Mtr3g2513 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 172 347 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2513 Mtr-Chr3 39112065 39115358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2513 41 372 Monolignol Biosynthesis Gene Families AT2G21730 25.148 5.56e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2513 K00121 - gmx:100817521 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2513 3 39112065 39115358 Mtr5g3045 5 39226163 39229660 PCT