Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2500 ATGGATTCTTTTGAGGCAGATGGAAACGGAAACGGAAATGGTAATGGTAATGGTAATGGTAATGGGGTGGAGGAGTCATTGCCTCCTCCACCTCCTGTTGTTCCCTCAGATGTGGTACCTCTCAAAGCAGAAGAGCTGGCCCCTCCCGAACCTGTTAAGAAAAAAATTGCCCGTCTTCCAATGGCGAGACGTGGTCTAGGATCAAAAGGAATGAAGATACCGATTCTAACTAATCATTTCAGCGTTAACATCGGTAAAAATGATGGATACTTTTTCCAGTACAGTGTGTCGTTTGCTTATGAAGATGGACGCCCTGTGGAAGGGAAGGGTGTTGGGAGGAAGATTATGGACAGGGTGCAGGAGACATACGCCTCTGACTTGAATGGCAAGGAATTTGCATATGATGGGGAGAAAAGCTTGTTTACTATTGGCTCTCTTCCACAAAACAAGCTCGAGTTTGAAATTGTTCTAGAGGATGTTGTTTCCAGCAGAAATAATGGAAATCGTAGTCCTGATGCTAATGGGGACAATGAAGCTGACAAAAAGAGGGTGCGACGCCCATACAATGCAAAGACATTTAAAGTTGAGATTAGCTTTGCTACAAAAGTTCCTATGTATGCCATAGCCAATGCGTTACGCGGGCAGGAAACTGAGAATTTCCAAGAAGCAGTCAGAGTTCTCGATATCATATTGAGGCAACATGCTGCTAAGCAGGGCTGCCTACTTGTGCGCCAATCTTTCTTCCACAATGATCCCAAGAATTTTGCTGATGTGGGGGGTGGTGTTCTAGGCTGTCGAGGATTCCATTCAAGTTTTAGAGCTACACAGAGCGGGCTCTCTCTTAACATAGATGTCTCAACTACCATGATAATTCAACCTGGGCCTGTGGTGGATTTCTTAATTTCCAATCAAAATGTTAGAGATCCTTTTCAGATTGACTGGGGAAAGGCCAAGAGGACCCTAAAAAATCTGAGGGTGAAGACTCATCCATCCAATCAAGAGTGGAAAATATGCGGACTCAGCGAAGTCCCATGCAAAGAGCTTACTTTTACTTTGAAGAAAAGGGATGGTGATGGTACTGATGAGATGACTGTTCTGGATTATTTTACTAATGTCCGGAAGATAGATCTGCGCTACTCTGCTGATCTTCCATGTATTAATGTTGGCAGGCCCAAACGGCCAACATATTTCCCCATTGAGCTGTGTGAATTGGTATCACTCCAACGATATACAAAAGCTCTTTCCACACTTCAAAGGGCTTCACTGGTGGAGAAGTCCAGACAGAAGCCACAAGAGAGAATGAGAATTTTGTCGGATGCACTTAAAACTAGCAACTACGGGGCTGAACCTCTGCTTCAAAGTTGTGGAATTTCTATAAGCACAGGCTTCACTCAAGTGGAGGGACGTGTTTTGCCTGCTCCAAAGTTGAAGTTCGGCAATGGTGAAGATTTCACTCCGAGAAATGGAAGATGGAATTTCAACAACAAGAAATTTGTGCAGCCAACAAAGAAGATAGAAAAATGGGCTGTGGCAAACTTTTCTGCACGATGTGATGTACGAGGACTTGTGAGGGATATAATTAGAATTGGAAATATGAAAGGAATTATGATTGACCAACCATTCGATGTGTTTGAAGAAAATCCTCAGTTTAGACGTGCTCCACCAATGGTGAGGGTAGAGAAAATGTTTGAGGACATTCAGTCCAAACTTCCAGGGGCTCCTCAATTCCTTCTTTGTTTGCTTCCTGATCGGAAAAACTGTGATATTTATGGGCCATGGAAAAAGAAGAATCTTGCTGATTTTGGAATCGTTAATCAGTGCATGTGTCCTTTGAGAGTCAATGATAATTATTTGGGTAATATTATGTTGAAGATAAATGCCAAGCTTGGTGGGTTGAACTCTTTGTTGGGTGTTGAAAGTTCTCCATCTCTTCCTATTGTTTCCAAAGCACCTACCCTCATTCTAGGAATGGATGTGTCCCATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCCGCCGTTGTCAGCTCTAGACAGTGGCCTCTGATTTCAAAATATAGGGCATGTGTTCGCACACAGTCTGCAAAAGTTGAAATGATAGATAATTTGTTCAAGAAAGTATCAGATACCGAGGATGAAGGCATCATGAGGGAACTCTTGCTCGATTTCTATACTAGTTCTAAGAATAGAAAACCAGATAACATAATTATTTTCAGGGATGGTGTTAGTGAGTCACAATTCAATCAAGTTTTGAATATTGAACTCGACCAGATCATTGAGGCATGCAAGTTTCTTGATGAAAATTGGACTCCAAAATTTGTGGTAATTGTTGCTCAAAAGAACCACCACACAAGATTCTTCCAGCCCAATTCTCCTGACAACGTCCCACCTGGAACTGTTATCGACAATAAAATTTGTCATCCAAGAAACTATGATTTCTACCTCTGTGCTCATGCTGGGATGATAGGCACCAGTAGGCCTACCCACTACCATGTGCTGCTTGATGAGATTGGCTTCTCCCCTGATGAACTTCAGGAGCTTGTTCATTCCCTGTCATATGTTTACCAGAGGAGCACGACTGCTATTTCAGTTGTTGCACCTATATGCTATGCACACTTGGCCGCTACTCAGTTGGGGCAGTTCATGAAATTCGAGGATAAATCTGAGACATCCTCAAGTCATGGTGGGCTGAGTGCTGCAGGAGCTGTACCTGTCCCTCAGCTGCCAAAGTTGCAGGACAACGTGTGCAACTCCATGTTCTTTGTTTGA 2772 0.4318 MDSFEADGNGNGNGNGNGNGNGVEESLPPPPPVVPSDVVPLKAEELAPPEPVKKKIARLPMARRGLGSKGMKIPILTNHFSVNIGKNDGYFFQYSVSFAYEDGRPVEGKGVGRKIMDRVQETYASDLNGKEFAYDGEKSLFTIGSLPQNKLEFEIVLEDVVSSRNNGNRSPDANGDNEADKKRVRRPYNAKTFKVEISFATKVPMYAIANALRGQETENFQEAVRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRATQSGLSLNIDVSTTMIIQPGPVVDFLISNQNVRDPFQIDWGKAKRTLKNLRVKTHPSNQEWKICGLSEVPCKELTFTLKKRDGDGTDEMTVLDYFTNVRKIDLRYSADLPCINVGRPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMRILSDALKTSNYGAEPLLQSCGISISTGFTQVEGRVLPAPKLKFGNGEDFTPRNGRWNFNNKKFVQPTKKIEKWAVANFSARCDVRGLVRDIIRIGNMKGIMIDQPFDVFEENPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCDIYGPWKKKNLADFGIVNQCMCPLRVNDNYLGNIMLKINAKLGGLNSLLGVESSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIMRELLLDFYTSSKNRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDENWTPKFVVIVAQKNHHTRFFQPNSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDNVCNSMFFV* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2500 923 SMART Piwi_a_2 576 884 IPR003165 GO:0003676
Mtr3g2500 923 CDD Piwi_ago-like 450 878 IPR045246 -
Mtr3g2500 923 CDD PAZ_argonaute_like 293 405 - -
Mtr3g2500 923 ProSiteProfiles PAZ domain profile. 318 406 IPR003100 GO:0005515
Mtr3g2500 923 MobiDBLite consensus disorder prediction 164 185 - -
Mtr3g2500 923 Gene3D - 643 923 IPR036397 GO:0003676
Mtr3g2500 923 SUPERFAMILY Ribonuclease H-like 561 882 IPR012337 -
Mtr3g2500 923 Pfam PAZ domain 297 422 IPR003100 GO:0005515
Mtr3g2500 923 SMART DUF1785_2 241 293 IPR014811 -
Mtr3g2500 923 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 922 - -
Mtr3g2500 923 Pfam Argonaute linker 1 domain 243 291 IPR014811 -
Mtr3g2500 923 Pfam Argonaute linker 2 domain 432 478 IPR032472 -
Mtr3g2500 923 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 922 - -
Mtr3g2500 923 SUPERFAMILY PAZ domain 288 446 IPR036085 GO:0005515
Mtr3g2500 923 Pfam Piwi domain 577 884 IPR003165 GO:0003676
Mtr3g2500 923 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g2500 923 Gene3D - 470 637 - -
Mtr3g2500 923 MobiDBLite consensus disorder prediction 1 39 - -
Mtr3g2500 923 Pfam N-terminal domain of argonaute 72 231 IPR032474 -
Mtr3g2500 923 Gene3D paz domain 287 410 - -
Mtr3g2500 923 ProSiteProfiles Piwi domain profile. 576 884 IPR003165 GO:0003676
Mtr3g2500 923 Pfam Mid domain of argonaute 485 566 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2500 Mtr-Chr3 38953340 38961528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2500 29 922 Eukaryotic Initiation Factors Gene Family AT1G48410 35.257 4.18e-166 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2500 K11593 - gmx:100820376 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2500 3 38953340 38961528 Mtr5g3055 5 39319628 39326522 PCT