Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2496 ATGGCTACTGCTGGTGATGTTCTCAGGCAGAGTTTACCTGAAGTGAGTGGTGCTGGTGTTGGAGAGTTGCACGTGCTTGCTGTGGATGATAGTTTTGTGGATCGTAAAGTCATTGAAAGGTTGCTTAAATTCACTTCTTGCAAAGTTACTGTTGTTGAAAGTGGAACTAGAGCTTTACAGTATCTTGGTTTGGATGGTGACACAAGTTCCATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACAGATTATTCTATGCCTGGGATGACAGGATATGAATTGCTCAAAAAGATTAAGCAGGAATCATCTGTTTTTAGAGAAATTCCAGTGGTGGTTATGTCCTCTGAGAATATCTTGACCCGAATCGATAGTTGCTTGGAAGAAGGGGCAGAGGAGTTTCTATTGAAACCTGTCAAGTTGGCAGATGTGAAACGCTTAACAGATTTCATAATGAGAGGCGAAGGGAAGAAAGTCGGAGGAAAAGTATCTCAAAAAAGAAGTCGGCCAGATGATTGTATTTCATCTCTATCAACTGCTTGTTCAACATGTGAACTGTTGCCATTGTCACAGTCTGCAATGTCGTCAAAGAAATCCAGACTATAA 606 0.4059 MATAGDVLRQSLPEVSGAGVGELHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLADVKRLTDFIMRGEGKKVGGKVSQKRSRPDDCISSLSTACSTCELLPLSQSAMSSKKSRL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2496 201 SMART REC_2 23 148 IPR001789 GO:0000160
Mtr3g2496 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 10 201 - -
Mtr3g2496 201 SUPERFAMILY CheY-like 22 152 IPR011006 -
Mtr3g2496 201 CDD REC_typeA_ARR 25 147 - -
Mtr3g2496 201 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 201 IPR045279 GO:0009736
Mtr3g2496 201 Gene3D - 23 177 - -
Mtr3g2496 201 ProSiteProfiles Response regulatory domain profile. 24 152 IPR001789 GO:0000160
Mtr3g2496 201 Pfam Response regulator receiver domain 25 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2496 Mtr-Chr3 38918807 38921377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2496 5 180 Response Regulator Gene Family AT3G48100 63.736 7.78e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g2496 Response_reg 3.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2496 K14492 - gmx:100306152 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3849 4 52186461 52188526 Mtr3g2496 3 38918807 38921377 ECH
Mtr3g2496 3 38918807 38921377 Mtr3g2496 3 38918807 38921377 ECH