Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2486 ATGGGTGGCAATGGAAAACACAGGTGGAAAATTTCCTTCCATCGTTCTTCTTCTCAATCCAAACAACAACCTCCTAAAGAGTTTCTATGTCCCATTACCGGTTCATTAATGTCCGACCCGGTCGTAGTCTCTTCGGGTCAAACGTTCGAACGTCTCTCCGTTCAAGTCTGTACCGATTTAAACTTCACTCCAGTCCTGCAAAACGGAACCCGACCCGATTTCTCAACAGTCATCACCAATCTCGCCATCAAAACTACCATCATAAACTGGTGCGATAAAACCCGTACTGTACACCCACCCGCGCCAGATTACTCCACCGTGGAGAATATTGTTAGGGAAAAAATGACGGCAGCGACGGCGGAGAAAGAGGATCTTATTAGGGTTTCTGAAAAGGAACTGTTAAACGCGGTGGCGGAGAATCCTCCGGTGATATTCTCACACGCCGTGACGGAGTTAGGTACACGTGGCAACCATTTCAACTCGGGATCTTCTTCAGAAGAATCGGTTATCATCGCAGCGAGTCCTGGAACGCCTTTACCTTTCACTCTTCGTCCAACGTGTTTCTCACCTTCTTCATCTTCATCGTTTGAGATCGAAGTTCAAAACCCTAACGTTCCTGTTTCGGAAGAAGAAGAAACTTTACTGAAGAAGCTGAAGAGTAAAGAGGTTTTTGAACAAGAACAAGGTTTAGTTTCGCTTAGGAGTATTACGAGGAACAGAGAAGAAGCTAGGGTTTCGTTATGCACGCCGCGGATTTTATCGTCGATTCGTTCGTTGATTGATTCGCGTTACGTTGTTGTTCAGGTCAACGCTGTTGCTTCGTTGGTCAACCTTTCGTTGGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCTTTTCTGATTGATGTGTTGAAAGGGGGGTTCAGTGAATCGCAGGAACATGCTGCGGGTGCGTTGTTTAGTTTGGCTTTGGATGATGATAATAAGATGGCAATTGGTGTTCTTGGTGCTTTGCAGCCGTTGATGCACGCGCTGAGGTCGGAGTCTGAGCGAACGAGGCATGATTCAGCGCTTGCGCTGTATCATTTAACGCTGGTTCAGAGTAATAGAGTTAAGATGGTTAAACTTGGGGTGGTTCCGACGTTGCTTTCGATGGTGATGACCGGGACAATGGCGAGTAGGGTTTTGTTGATTTTGTGTAATCTGGCAATGTGTGTGGAGGGAAGGACTGCAATGCTGGATGCCAATGCAGTGGATTGTTTGGTGAGTTTGTTGAGGGGGAGTGAGCTGGACTCCGAGGCGACAAGGGAGAATTGTGTGGCGGCGTTGTATGCATTGAGTCATGGGAGTTTGAGATTTAAAGGGTTGGCGAAGGAAGCGAATGCTGTGGAGGTTTTGAGGGTGATTGAGGAGACAGGGACAGATAGGGCAAGGGAGAAGGCTAAAAGGGTGTTGGAGAAGATGAGGGGTTTTGGAGATGGTGATGATGAAGATGGTTCTGAGTTTGATAGTCTTTTTGAATCGAGTGGGTTGACTCGAACGAGGTATCGGGTTGCAGGAGGTAGGAACAATAACCTTGTCAACTCAACTACATTTTAG 1590 0.4686 MGGNGKHRWKISFHRSSSQSKQQPPKEFLCPITGSLMSDPVVVSSGQTFERLSVQVCTDLNFTPVLQNGTRPDFSTVITNLAIKTTIINWCDKTRTVHPPAPDYSTVENIVREKMTAATAEKEDLIRVSEKELLNAVAENPPVIFSHAVTELGTRGNHFNSGSSSEESVIIAASPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPVSEEEETLLKKLKSKEVFEQEQGLVSLRSITRNREEARVSLCTPRILSSIRSLIDSRYVVVQVNAVASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGFSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKMVKLGVVPTLLSMVMTGTMASRVLLILCNLAMCVEGRTAMLDANAVDCLVSLLRGSELDSEATRENCVAALYALSHGSLRFKGLAKEANAVEVLRVIEETGTDRAREKAKRVLEKMRGFGDGDDEDGSEFDSLFESSGLTRTRYRVAGGRNNNLVNSTTF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2486 529 Gene3D - 387 487 IPR011989 -
Mtr3g2486 529 MobiDBLite consensus disorder prediction 1 25 - -
Mtr3g2486 529 SUPERFAMILY ARM repeat 213 482 IPR016024 -
Mtr3g2486 529 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 520 - -
Mtr3g2486 529 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Mtr3g2486 529 CDD RING-Ubox 29 77 - -
Mtr3g2486 529 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Mtr3g2486 529 PANTHER U BOX DOMAIN-CONTAINING 1 520 - -
Mtr3g2486 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Mtr3g2486 529 Gene3D - 212 386 IPR011989 -
Mtr3g2486 529 SMART arm_5 322 362 IPR000225 GO:0005515
Mtr3g2486 529 SMART arm_5 402 445 IPR000225 GO:0005515
Mtr3g2486 529 SMART arm_5 281 321 IPR000225 GO:0005515
Mtr3g2486 529 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Mtr3g2486 529 SUPERFAMILY RING/U-box 12 97 - -
Mtr3g2486 529 Pfam U-box domain 25 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2486 Mtr-Chr3 38783718 38786155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2486 1 529 U-box Gene Family AT5G65200 58.467 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2486 - - gmx:100784564 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2486 3 38783718 38786155 Mtr3g2486 3 38783718 38786155 ECH