Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2480 ATGAGTCTAAAACAAATCTGGTTCTGGATAATACTCACTTTTCTGTTTCTGTTTTTTCTAAAGACAAATTCAGAATCAGAAAATGTCAGAAAAGCCCTTGTCAAATTCATGCATCAACTTGAACCACCTGATCAGAATTCGATGCAGGGTTGGAACCTCACATCAGATCCATGCGCTCATAACTGGCTAGGTGTAACTTGTTACGCAAACAACCAATACATTAAGACTATAGTTCTTGAAGAACTTAATTTCACCGGCGTTCTAGACGCTACTTCTCTTTGCATTGCTAACACTCTTCAGTACCTCAGCCTCAACAACAATTACTTACACGGTTTTATATCGGAGGATATAAAAGACTGTAAGTTTTTGACACACTTGCTTCTTAGTGGTAACAAATTCTCTGGCAATCTTCCTGTTTCCATTCCTCAACTACGTAACATGAAGCGCCTGCATGTTTCAGACAATCTCTTCACCGGAAACCTTCCAAATATGGTTAATGTTACAAGCTTGATATCTTTTTTAGCTCAAAACAACAATTTCACTGGTCAGATTCCTGATTTTGATTTCTCCAACTTTGAAGTTTTTAATGTCTCTAACAACAATTTACGCGGTCCTGTTCCTGATGTTGGAGGTAGATTTAGTGCAGATAGCTTTTATGGTAATCCTAATTTATGCGGAAAACCAATTTCAAACTCGTCATGTCCGCCTCCACCACCACCTCCTCCTCCAATCGTTATAAAAGACAAAAAGAAAAATCCATTTCTTAATGATTTGCCAATTTATTCAGGCTACATAGTTATTGGTTTAATGTTCATAATTTTCTTGATCTTCAAGTTGTCAAGAAAATGCATGACCAAAAATAGAGAAACAGGATTAGATCATGTTGAAAAGAAGGACATGTCACAAGACACTAGTGGTGGCGTTGTTATTGTTGGAGGTGAAAAGCTTAGTGAGATATTAAATTCAAATGGATCAAAGAATTGGTTTAATGGACTTGGAGTTAGATCAGAGTATTCTATGACATCTATGGAAAGTGGAGTGACTACATCAGGTCTTGTTCTTCTTTCAAGTAGAAAGCTTAGGGGATTGCAATTTGAGGACTTGTTAAGTGCTCCTGCTGAATTGATTAGGAGAGGAAAACATGGAAGCCTATACAAAGTTATGCTAGATAATGGTGTGCTTTTGGCTGTTAAGAGGATCAAGGATTGGGGGATTTCGAAGCATGAATTCGAGAGAAGGATGAACTTAATAGCTCAAGTGAAGCATACTCTTGTAATGTCACCTGTTGCATACTATTGCTCTCAGCAAGAGAAACTTCTGGCGTATGAATATCTTCCGAATGGTAGCCTCTTCATGTTGCTCTATGGATCTCAAAGTGGACACTCTCTTGATTGGAGGAGCAGACTAGATGTTGCTGCTAAGATAGCTGAAGCTTTGGCCTATATGCATGAGGAGCTTGGTGAGAGTGGAATAGCACATGGTAACTTCAAATCGAGTAACATTCTGTTTGACAAGAATATGAACCCACAAATAAGCGAATATGGTCTAATGGTCGCGGAAAATCAAGGTGTCATTTCTCATATCAGAAGCCGCAGAAACAAAAACATGTCTGCATCAGCCACCTTCAGAGCTGATATATATGCCTTCGGTGTGATACTTCTCGAACTCCTGACAGGAAAAGTAGTTAAAAATGATGGATTTGATTTGGTTAAATGGGTGAATTCAGTCATCAGTGAGGAATGGACTGCAGAAGTTTTTGATAGGTCTCTAATCTCACAAGGTGCTTCTGAAGAGAGAATGGTGAACTTGTTGCAGGTGGCATTAAAATGCATTAATCCTTCTCCAAATGATAAGCTAAGTATGAGTCAAGTGGCACTCATCACAAATGCGCTGAAAGATGAAGACGAAAAATCTGTATCCTTTGACAGATGA 1932 0.3856 MSLKQIWFWIILTFLFLFFLKTNSESENVRKALVKFMHQLEPPDQNSMQGWNLTSDPCAHNWLGVTCYANNQYIKTIVLEELNFTGVLDATSLCIANTLQYLSLNNNYLHGFISEDIKDCKFLTHLLLSGNKFSGNLPVSIPQLRNMKRLHVSDNLFTGNLPNMVNVTSLISFLAQNNNFTGQIPDFDFSNFEVFNVSNNNLRGPVPDVGGRFSADSFYGNPNLCGKPISNSSCPPPPPPPPPIVIKDKKKNPFLNDLPIYSGYIVIGLMFIIFLIFKLSRKCMTKNRETGLDHVEKKDMSQDTSGGVVIVGGEKLSEILNSNGSKNWFNGLGVRSEYSMTSMESGVTTSGLVLLSSRKLRGLQFEDLLSAPAELIRRGKHGSLYKVMLDNGVLLAVKRIKDWGISKHEFERRMNLIAQVKHTLVMSPVAYYCSQQEKLLAYEYLPNGSLFMLLYGSQSGHSLDWRSRLDVAAKIAEALAYMHEELGESGIAHGNFKSSNILFDKNMNPQISEYGLMVAENQGVISHIRSRRNKNMSASATFRADIYAFGVILLELLTGKVVKNDGFDLVKWVNSVISEEWTAEVFDRSLISQGASEERMVNLLQVALKCINPSPNDKLSMSQVALITNALKDEDEKSVSFDR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2480 643 PANTHER OS05G0588300 PROTEIN 5 642 - -
Mtr3g2480 643 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Mtr3g2480 643 SUPERFAMILY Protein kinase-like (PK-like) 374 625 IPR011009 -
Mtr3g2480 643 ProSiteProfiles Protein kinase domain profile. 370 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g2480 643 Gene3D Phosphorylase Kinase; domain 1 342 444 - -
Mtr3g2480 643 SUPERFAMILY L domain-like 27 212 - -
Mtr3g2480 643 Pfam Protein kinase domain 376 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g2480 643 Gene3D Transferase(Phosphotransferase) domain 1 445 642 - -
Mtr3g2480 643 PANTHER LRR RECEPTOR-LIKE KINASE 5 642 - -
Mtr3g2480 643 Gene3D Ribonuclease Inhibitor 26 190 IPR032675 -
Mtr3g2480 643 Gene3D Ribonuclease Inhibitor 191 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2480 Mtr-Chr3 38735991 38738632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2480 39 624 Receptor kinase-like Gene Family AT1G68400 33.333 8.66e-90 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Mtr3g2480 Pkinase 4.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2480 - - pvu:PHAVU_009G180700g 808.905