Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2477 ATGGCAGCACGCAGATTTTTCTCCTTGGTTTCTCGTTCTCAATCTTTCCCTAGGCCTACTCTTGGCTTTGTTTCTCTGCTTCATACATTAGGAAGAGACACTCAAAGGAGTAGAAACATAAGCAAGTTGAGCACTGCTGCTGAAGTTGATGAATTAATCACACCATCTGTGGAAATAAGATACACAAAGAATCTCATTAATGGGAAATTTATGGATGCTGCATCAGGAAAAACTTTTCCTGCTTATGACCCAAGAACTGGGGAAGTGATTGCTCATGTTGCTGAAGGTGATCAAGAAGATATCAATCGTGCAGTATCTGCAGCTAGAAAGGCTTTTGATGAAGGACCATGGCCAAAGATGACCCCTTATGAAAGATCACGGATCCTATTGCGTGTTGCTGATTTGGTTGAGAAACACAACGATGAACTTGCGGCATTGGAAACATGGAATAACGGCAAGCTTTATGAGCAAGCTGTAAATATTGAAGTGCCTATGTTTGTACGTTTGCTCCGCTACTATGCTGGTTGGGCAGATAAAATACATGGTCTCACAGTTCCAGCTGATGGGAATTATCATGTACAAGTATTGCATGAACCAATTGGGGTTGCAGGACAAATCATACCTTGGAACTTTCCTATATTGTTGTTTGCTTGGAAAGTTGGTCCTGCATTAGCATGTGGTAATACTGTTGTAGTAAAGACTGCTGAACAAACACCTTTAACTGGTTTATTTGCAGCACAGCTATTTCAAGAGGCTGGTCTTCCACCTGGAGTTCTAAATGTTGTGTCTGGTTTTGGTCCAACTGCTGGTTCTGCTCTTGCCAGTCATATGGATGTTGACAAGATAGCATTCACTGGATCAACTGACACAGGAAAAATAATATACCAATTGGCTGCAAAAAGCAATCTCAAGCCAGTTACATTAGAGCTTGGAGGAAAATCACCATTTATAGTGTGTGAGGATGCTGATGTTGACAAGGCTGTTGAACTTGCACATTTTGCTTTGTTCTTTAATCAGGGTCAATGTTGTTGTGCCGGGTCGCGTACTTATGTCCATGAACGAATATATGATGAGTTCTTGGAGAAAGCCAAGGCCGCTGCTTTGAGACGTGTTGTTGGCGATCCATTCAAGAAAGGTGTAGAACAAGGTCCTCAGGTTGATTCACAACAGTTTGAGAAAATCCTCAAATACATCAAGTCAGGTGTTGAAAGTAATGCTACTCTTGAATGTGGTGGTGACAGAATTGGCACAAAAGGCTTCTTTGTCCAACCAACAGTCTTCTCAAATGTTCAGGATGACATGTCAATAGCTAAGGATGAGATCTTCGGCCCTGTTCAAACCATATTGAAATTCAAGGACACTGATGAAGTCATAAGAAGGGCAAATAATACACGTTATGGTCTTGCTGCAGGAGTGTTCACAAATAATTTGGACACTGCAAATACTTTGATGAGAGGATTAAAGGCAGGAACAGTGTGGATTAATTGCTTTGATGTGTTTGATGCTGCAATTCCATTTGGTGGGTACAAGATGAGTGGGGTAGGAAGGGAGAAAGGTATATATAGTCTTCATAATTACTTGCAAGTTAAGGCTGTGGTTACACCTCTAAAGAATCCAGCATGGTTGTAA 1629 0.4125 MAARRFFSLVSRSQSFPRPTLGFVSLLHTLGRDTQRSRNISKLSTAAEVDELITPSVEIRYTKNLINGKFMDAASGKTFPAYDPRTGEVIAHVAEGDQEDINRAVSAARKAFDEGPWPKMTPYERSRILLRVADLVEKHNDELAALETWNNGKLYEQAVNIEVPMFVRLLRYYAGWADKIHGLTVPADGNYHVQVLHEPIGVAGQIIPWNFPILLFAWKVGPALACGNTVVVKTAEQTPLTGLFAAQLFQEAGLPPGVLNVVSGFGPTAGSALASHMDVDKIAFTGSTDTGKIIYQLAAKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHERIYDEFLEKAKAAALRRVVGDPFKKGVEQGPQVDSQQFEKILKYIKSGVESNATLECGGDRIGTKGFFVQPTVFSNVQDDMSIAKDEIFGPVQTILKFKDTDEVIRRANNTRYGLAAGVFTNNLDTANTLMRGLKAGTVWINCFDVFDAAIPFGGYKMSGVGREKGIYSLHNYLQVKAVVTPLKNPAWL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2477 542 SUPERFAMILY ALDH-like 56 536 IPR016161 GO:0016491
Mtr3g2477 542 CDD ALDH_F2BC 59 534 - -
Mtr3g2477 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491
Mtr3g2477 542 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 29 542 - -
Mtr3g2477 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491
Mtr3g2477 542 Pfam Aldehyde dehydrogenase family 72 532 IPR015590 GO:0016491
Mtr3g2477 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 314 503 IPR016163 GO:0016620
Mtr3g2477 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 532 IPR016162 GO:0016491
Mtr3g2477 542 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 29 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2477 Mtr-Chr3 38699499 38703551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2477 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 75.691 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2477 K00128 - tcc:18603880 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3825 4 51970802 51974677 Mtr3g2477 3 38699499 38703551 ECH
Mtr8g3729 8 47757976 47761864 Mtr3g2477 3 38699499 38703551 ECH
Mtr3g2477 3 38699499 38703551 Mtr3g2477 3 38699499 38703551 ECH