Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2476 ATGACTCCAACCCAACGCCGTCCCTTATCCTTTCCAGCAGTCCACCCCTGCAAATCCATCTCTGCTTCAACCCTCTTAACTTCCCTCATCACTCTCTCACAAAACATATGCACTTTTCAACCAAATACCTTCCCTACTCAAAAACCATACGCCAGAGAAACAAAACGCCAAATCCAAATTCTTCTCATATTCTTCCAAGACCTTCAATCACATAACTCTTTCATCCCCCAACCAATCATTCCTGTCTTCTCCGAACTTCACTTCACACTACAAAAAATTCACTTCTTATTCCAAGATTGTTCAATTCAAGGCACAGGTCTCTTGTTGCTCGTCAAATACCAATTCGTTGCCACACAGTTTTATCTTCTCATATGCTCAGTCTCAAAATCTCTTGACGCGTTACCCCTTAATCTCATCGATGTATGCGATGAGGTTAAAGAGGTAATTCAATTACTAACCAAACAAGCTAGACATATCCAGCTGGAACTTGATCATAATGATGAATACACAGCCAAAAGCGTCAACTCAATTTTGAATCAATTCGAACTAGGAATTGAACCTGATGTAGATTCCATCAAACAAGTACTTGATTATCTTGAAATCAAAACTTGGTTTGATTGTAACAGAGAAATCAAATTCCTCCAAGACGAAGAACTAGAGAAACATCAATATCAAGAGAAAGAGATTCATTTGTTGAGTGGTTTAATAGGTTTTTTGTGCTATTGTCGTGTGATAATATTCGAAACACTAGATTTTCAATTTCAACTGCTAAGCCATAACAAAACTGAAACCAGGTGCACAGCAGAGATGTTAAACTACATAACACCGGATGATTACCGTTGTCCGATTTCTCTGGAACTAATGACAGATCCTGTAACTGTTTCCACTGGCCAAACATACAACAGAACCTCAATTCAAAAATGGTTTAAAGCAGGAAACATGACATGTCCAAAAACAGGAGAAAGACTCATTTCCACTGAGCTTTTTCCCAACACAGCACTTAAAACACTTATCCAACAGTTCTGTTATGATAACAAAATTTCAGTTTCAACATCCAAGCTCCACATCAGCAAACCTGCATCCACGGTTAATCCCGGTAGTCCAGCTGCAGCACATGCAATACAATTCACGTCATGGTCATTAGCCCGGAGACTAGTTTTCGGAACAGAGGAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTACTCGCGAAATCAAATGTTTTCAACACGGCATGTTTGGTTGAAATTGGAACTGTGCCACCGTTGATTGATCTTGTTCTAACTTCAACAACGCAAGAGAACGCAATTGCTGCTCTTTTGAAGCTTTCGAAGCATACTAATGGCCGCGAAGTTATCATGGAGAGTAGAGGTTTAAAACCTATTGTTACAGTTCTCAGAAAAGGATTTAGTTTAGAAGCCCGTCGAGTTGCAGCTGGTATAATATTTTACCTCACTTCAGTGAAAGAGTACAGAAAATTAATAGGCGAAAATTCAGAGGCAGTTTCTGGTTTAGTTGAATTGATAAAGAAAGGAACAATTCGAGGAAAAAAGAACGCGGTGCTTGCAATTTTCGGGTTGTTATTGCTTCATAAGAATCATTCTAAGGTACTTAACTCTGGTGTTGTTCCGGCTATTGTTAAAGTTTTAGGTTCTTCGGATAAAGGTTATGTTGTTAATGATTGTTTAGCGGTTTTGGTAGCATTGGCGGAGAATGTGGATGGTGCTCGTGCTGTATTAGAATGCTCGGGTTTGTCATTGGTTATTGGGATTTTGCAATCTGCAAATTCGCGTGCGGAGAAGGAGTACTGTGTTTCCATTTTGGTTTCACTATGTGTTAATGTTGGTGGAGAGGTTGTTAGTGTTTTGGCGAAGCATGCTTCGGGGATTATGCCTTTGCTTTATGCAAATCTTACCGATGGTACTCCTCAAGCGGAGAAGAAAGCGCGGAAACTTATTAATGTCTTGCAAGAATTTGATGAGAAGAGGACTTTGGGAATGGTGTTGGTTCATGTGGGTGTTGTTGTTGCTGTTGCATATAATAATGACTGA 2052 0.3957 MTPTQRRPLSFPAVHPCKSISASTLLTSLITLSQNICTFQPNTFPTQKPYARETKRQIQILLIFFQDLQSHNSFIPQPIIPVFSELHFTLQKIHFLFQDCSIQGTGLLLLVKYQFVATQFYLLICSVSKSLDALPLNLIDVCDEVKEVIQLLTKQARHIQLELDHNDEYTAKSVNSILNQFELGIEPDVDSIKQVLDYLEIKTWFDCNREIKFLQDEELEKHQYQEKEIHLLSGLIGFLCYCRVIIFETLDFQFQLLSHNKTETRCTAEMLNYITPDDYRCPISLELMTDPVTVSTGQTYNRTSIQKWFKAGNMTCPKTGERLISTELFPNTALKTLIQQFCYDNKISVSTSKLHISKPASTVNPGSPAAAHAIQFTSWSLARRLVFGTEEQKNKAAYEIRLLAKSNVFNTACLVEIGTVPPLIDLVLTSTTQENAIAALLKLSKHTNGREVIMESRGLKPIVTVLRKGFSLEARRVAAGIIFYLTSVKEYRKLIGENSEAVSGLVELIKKGTIRGKKNAVLAIFGLLLLHKNHSKVLNSGVVPAIVKVLGSSDKGYVVNDCLAVLVALAENVDGARAVLECSGLSLVIGILQSANSRAEKEYCVSILVSLCVNVGGEVVSVLAKHASGIMPLLYANLTDGTPQAEKKARKLINVLQEFDEKRTLGMVLVHVGVVVAVAYNND* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2476 683 PANTHER OS07G0532750 PROTEIN 4 665 - -
Mtr3g2476 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 458 IPR000225 GO:0005515
Mtr3g2476 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 584 IPR000225 GO:0005515
Mtr3g2476 683 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Mtr3g2476 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Mtr3g2476 683 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Mtr3g2476 683 SUPERFAMILY ARM repeat 388 656 IPR016024 -
Mtr3g2476 683 SUPERFAMILY RING/U-box 275 348 - -
Mtr3g2476 683 CDD RING-Ubox_PUB 279 321 IPR045210 -
Mtr3g2476 683 PANTHER U BOX DOMAIN-CONTAINING 4 665 - -
Mtr3g2476 683 Gene3D - 373 678 IPR011989 -
Mtr3g2476 683 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2476 Mtr-Chr3 38694868 38697636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2476 2 664 U-box Gene Family AT1G60190 39.497 8.09e-150 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2476 - - gmx:100810963 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3824 4 51958373 51960753 Mtr3g2476 3 38694868 38697636 ECH
Mtr3g2476 3 38694868 38697636 Mtr3g2476 3 38694868 38697636 ECH