Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2474 ATGGAGATTGTAATTTCATTGATAATCTTATTTGTTGGGATTGCTATTTTGGTGTCTATTCATTTCTGCATAGTTGGAAGGGCTTTTAGAAGGGATAGTAACAATGAAGACATGCAAGTCCAGAGTAGCAGTACTAGGAGCACTGCAAAAGGAATGTTTGGTGGTGACAATATTGGTGACTTGAAGAACCTTCCTTGTTTTGATTATGTGGAACAACCAGAGAAAGGAAACAACAACCTTGTGGATTGTGCTGTTTGTTTGGAGAGTTTTAAGGTTGGTGATGCTTGTAGGTTGTTGCCTAATTGCAGGCATAGCTTTCATGTTCAGTGTATAGATTTGTGGATTCTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCACGTGTAATTATGAGGGAAGGAAGTGCTGATTCTGATATTGTACATATTGAAATGCCATAA 450 0.38 MEIVISLIILFVGIAILVSIHFCIVGRAFRRDSNNEDMQVQSSSTRSTAKGMFGGDNIGDLKNLPCFDYVEQPEKGNNNLVDCAVCLESFKVGDACRLLPNCRHSFHVQCIDLWILKTPFCPICRTWVHSRVIMREGSADSDIVHIEMP* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2474 149 SMART ring_2 83 124 IPR001841 -
Mtr3g2474 149 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 148 - -
Mtr3g2474 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 133 IPR013083 -
Mtr3g2474 149 SUPERFAMILY RING/U-box 70 131 - -
Mtr3g2474 149 Pfam Ring finger domain 82 125 IPR001841 -
Mtr3g2474 149 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 148 - -
Mtr3g2474 149 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2474 Mtr-Chr3 38684621 38685070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2474 44 130 Rapid Response to Elicitors AT3G16720 39.080 7.79e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2474 - - gmx:102662675 198.749