Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2454 ATGGATAATTTCCTATATGGAGGTGGTTATGATTTGAACAACAACCTTTCTCAAAGGAATAATCAAATGGAAATGATGGTTACAAACCAAAATTATTTTCCATTCAATATTTCTCAAGAAACCAAGCCTTTGAATAGTGTTGTACCAGATGAAGTCTCATGCATATCCTCAGTGAATTATTACAAAAGAGTTGGCATGAACAGAAATAATAAGGCATATCCTTATGCCTCTAGGAAGCCTGAGAAAGTTAAAAAGAAGATCAACTTTATAAAAGGGCAATGGACAGTAGAAGAAGATCGGTTGTTGGTTCAGCTGGTTGGAGAACATGGTTTGAGGAAATGGTCTCATATTGCTGAGAATTTGCCTGGTAGAATTGGAAAACAATGCAGAGAAAGATGGCATAATCATCTAAAGCCTGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAACATATTGATCAAAGCACATGAAGAGATAGGAAACAAATGGGCAGAGATAGCTAAAAGGTTACCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAATACTCCAAAAGAAAGGGTAGATCAAAGTACCCTAAAGGAACTCTTCTACAAAAATATATCAAGAGCTTAAACCTAGACGAAAATCCTCCGAAAGATTATAGAAGAAAACCTTCAGCTAATGCTATAAAAAACAAAACCAACAGAAGCACAACAATATCCTCTCAGTCTCAACAAACTGAACAATTTTTTCCCAATGATCAGTGTTTGGTACCAACTTGTGATTTTGATGATGTCCCGGATTTTTCTTTCGATGAGAATTTGTTTCAAAATGGGTGTAGTATTGATTCTCTACTAGATGATATGCAATGTGCTGAAGCTGATCAAATTATGGAAGGAAAAAAACATTTTGATGTTGAGACAGAAATGCCATTGGATATTATGGAATCTATGCTTGGAGTTGAAGTTAAGAAGGAGATGGATTTGATGGAGATGGTTTTTTCAGGTCAACGAAAATTTTCAAGTGACTCATTTTTTGGTAATGACATCAACATTGGTTTGTGA 1074 0.3538 MDNFLYGGGYDLNNNLSQRNNQMEMMVTNQNYFPFNISQETKPLNSVVPDEVSCISSVNYYKRVGMNRNNKAYPYASRKPEKVKKKINFIKGQWTVEEDRLLVQLVGEHGLRKWSHIAENLPGRIGKQCRERWHNHLKPDIKKDIWSEEEDNILIKAHEEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKGRSKYPKGTLLQKYIKSLNLDENPPKDYRRKPSANAIKNKTNRSTTISSQSQQTEQFFPNDQCLVPTCDFDDVPDFSFDENLFQNGCSIDSLLDDMQCAEADQIMEGKKHFDVETEMPLDIMESMLGVEVKKEMDLMEMVFSGQRKFSSDSFFGNDINIGL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2454 357 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Mtr3g2454 357 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Mtr3g2454 357 Gene3D - 145 210 - -
Mtr3g2454 357 PANTHER BNAC03G62830D PROTEIN 18 289 - -
Mtr3g2454 357 PANTHER MYB PROTEIN-RELATED 18 289 - -
Mtr3g2454 357 MobiDBLite consensus disorder prediction 217 247 - -
Mtr3g2454 357 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Mtr3g2454 357 Pfam Myb-like DNA-binding domain 146 185 IPR001005 -
Mtr3g2454 357 SMART sant 90 139 IPR001005 -
Mtr3g2454 357 SMART sant 142 190 IPR001005 -
Mtr3g2454 357 Gene3D - 90 143 - -
Mtr3g2454 357 MobiDBLite consensus disorder prediction 231 247 - -
Mtr3g2454 357 CDD SANT 146 188 IPR001005 -
Mtr3g2454 357 CDD SANT 94 137 IPR001005 -
Mtr3g2454 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Mtr3g2454 357 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Mtr3g2454 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2454 Mtr-Chr3 38406109 38407797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2454 18 303 MYB Transcription Factor Family AT4G18770 53.020 1.31e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g2454 Myb_DNA-binding 9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2454 K09422 - gmx:100781456 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3808 4 51837801 51839691 Mtr3g2454 3 38406109 38407797 ECH
Mtr3g2454 3 38406109 38407797 Mtr3g2454 3 38406109 38407797 ECH
Mtr4g3808 4 51837801 51839691 Mtr3g2454 3 38406109 38407797 PCT