Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2440 ATGGGTATCATCAACAACAACAATATCAAAATAAATAGAGAAATTGAGAAGGTGAATGGGAAGGAATTGAATTACAGTGAATTTGTTGAAAGATATATGGACAAGAACAAACCAGTGGTGTTAACTGGATTAATGGATCATCATTGGAGAGCTTGCACTGATTGGGTTACACCTGATGGAAAACCTAATCTTCAATTTTTCTTCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACCAGAGATTTCACTGATCAAAAAAGGGAGGAGATGTTGGTCTCTGATTTCCTTGAACGTTGCCTTGAAGTTGAGGGTTCTGCAGTTCAGTGCAGTAATGAAAATGGTGAATGTAATGGTGACTCTGTGTCTGTACCGTATTTGAAGGATTGGCATTTTGTCAAGGAGTATCCAGAATATGTAGCATACATAACTCCAACTTTCTTTTGTGATGATTGGCTTAACTTGTATCTTGACAACTTCAGAATGAATACTCATTCCGGCAGTGACCAGCAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTACAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCACAGTGCCATCTTGTGTTTGACAGGAATGCGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATTCCCTGGTTTTGAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAAGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTTATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTGAGCGACTACAACGAGGCCAAGGAATACATTGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAACCTTGCTGCTAACACAGGGATGAATTTTTTTGACTTCTTTACTTTCATTGCATACTTCGCATTGGCCAACTTGGTGCTCCTTTGCTACATATATGGAAGAGTTGGAAGTACCACTGGAAGTTTGTCAAGAGTAGCTCATCATTTATCTTTAAATATTGGCTCTATTAGGAAGGTTGCATCAGATATGAAACACGTGCATGCTTTAGAAGGGACTCGTGATTGCATCGTGGATATGATAAAAACATTTGAAGATCCTAGGTTTTCCAAATTCTGCATGCAGGTGGGAAAAACATATTTAATGATACATGAGCAATCCAATCTGTCCTCTGATTTTGAGAGTGCTTCATTGGTTGATTTGGTGGACCTCTGTGTTTTGAAAGCGTGCACTTCTTCTCAGATTTACACACCTGAAGACCTCATCAAATTTATAGACAATACCATCGCAGAACTGGGAGATATTAACATGGAGTCATCTGTATTGCACGTTGCTTGA 1488 0.3851 MGIINNNNIKINREIEKVNGKELNYSEFVERYMDKNKPVVLTGLMDHHWRACTDWVTPDGKPNLQFFFNHFGSSKVQVADCDTRDFTDQKREEMLVSDFLERCLEVEGSAVQCSNENGECNGDSVSVPYLKDWHFVKEYPEYVAYITPTFFCDDWLNLYLDNFRMNTHSGSDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNAKSCVYNIFDEVSDSKFPGFEKAIWLECTQEAREIIFVPSGWYHQVYNLEDTISINHNWFNAYNLSWVWNLLLSDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFFDFFTFIAYFALANLVLLCYIYGRVGSTTGSLSRVAHHLSLNIGSIRKVASDMKHVHALEGTRDCIVDMIKTFEDPRFSKFCMQVGKTYLMIHEQSNLSSDFESASLVDLVDLCVLKACTSSQIYTPEDLIKFIDNTIAELGDINMESSVLHVA* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2440 495 ProSiteProfiles JmjC domain profile. 153 308 IPR003347 -
Mtr3g2440 495 SMART cupin_9 128 308 IPR003347 -
Mtr3g2440 495 SUPERFAMILY Clavaminate synthase-like 8 314 - -
Mtr3g2440 495 Pfam Cupin-like domain 27 291 IPR041667 -
Mtr3g2440 495 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 481 - -
Mtr3g2440 495 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 12 481 - -
Mtr3g2440 495 Gene3D Cupin 4 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2440 Mtr-Chr3 38241509 38245753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2440 5 300 Glycosyltransferase AT1G78280 21.975 2.47e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr3g2440 Cupin_8 5.6e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2440 - - gsj:114409851 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2440 3 38241509 38245753 Mtr3g2440 3 38241509 38245753 ECH