Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2438 ATGGCTAAGCGTTTGATTCCAACCTTCAATTGCATCCTTGCTGAAAAAATTGTCCCTCCTTCCAAGACCTCCGCCGGTGTTCTCCTCCCAGAGAAGACTTCCCAGCTTAATTCTGGAAATGTGGTAGCTGTTTGCCCTGGATCACGAGACAAATCTGGGAATTTGATTCCATTGTCTGTCAAGGAAGGTGACCACGTTGTCTTGGCGGAATATGGTGGCTCCCAAATTAAGCTTGATGACAGAGTATTTAATATGGAACAGCATATTTAA 270 0.4444 MAKRLIPTFNCILAEKIVPPSKTSAGVLLPEKTSQLNSGNVVAVCPGSRDKSGNLIPLSVKEGDHVVLAEYGGSQIKLDDRVFNMEQHI* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2438 89 PANTHER GROES-LIKE FAMILY PROTEIN 1 85 - -
Mtr3g2438 89 SUPERFAMILY GroES-like 4 82 IPR011032 -
Mtr3g2438 89 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 85 IPR020818 GO:0005524|GO:0006457|GO:0140662
Mtr3g2438 89 SMART Cpn10_2 4 83 IPR020818 GO:0005524|GO:0006457|GO:0140662
Mtr3g2438 89 Pfam Chaperonin 10 Kd subunit 7 82 IPR020818 GO:0005524|GO:0006457|GO:0140662
Mtr3g2438 89 CDD cpn10 4 80 IPR020818 GO:0005524|GO:0006457|GO:0140662
Mtr3g2438 89 Gene3D GroES chaperonin 1 87 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2438 Mtr-Chr3 38217121 38219139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2438 22 80 Calmodulin-binding Proteins AT5G20720 43.333 2.32e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2438 K04078 - gmx:100499767 139.813